View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1957_low_27 (Length: 268)
Name: NF1957_low_27
Description: NF1957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1957_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 39163299 - 39163048
Alignment:
| Q |
1 |
ttatttatctatatgacagttatgtataaaacatgtacacatgcactttctttaagcaaggatcgtttacaatatgaattccctatagaggcaatcaatt |
100 |
Q |
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| T |
39163299 |
ttatttatctatatgacagttatgtataaaacatgtacacatgcactttctttaagcaaggatcgtttacaatatgaattccctatagaggcaatcaatt |
39163200 |
T |
|
| Q |
101 |
ctaaggtgttaacaatggctcataggtcagagaagcaaaataaatcaaagggaaactcacaatgcaccgcctccagcaggacctattgttttgaatgctg |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39163199 |
ctaaggtgttaacaatggctcataggtcagagaaacaaaataaatcaaagggaaactcacaatgcaccgcctccagcaggacctattgttttgaatgctg |
39163100 |
T |
|
| Q |
201 |
acatagtagtcattgtaatgccattagctgcccctctttgatgttgttcctg |
252 |
Q |
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| T |
39163099 |
acatagtagtcattgcaatgccattagctgcccctctttgatgttgttcctg |
39163048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 155 - 252
Target Start/End: Complemental strand, 2609632 - 2609535
Alignment:
| Q |
155 |
actcacaatgcaccgcctccagcaggacctattgttttgaatgctgacatagtagtcattgtaatgccattagctgcccctctttgatgttgttcctg |
252 |
Q |
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| T |
2609632 |
actcacactgcaccacctccagctggaccaattgttttgaatattgacattccagtcatagcaatgccgttagctgcccctctttgacgttgctcctg |
2609535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 142 - 252
Target Start/End: Complemental strand, 2623754 - 2623644
Alignment:
| Q |
142 |
aaatcaaagggaaactcacaatgcaccgcctccagcaggacctattgttttgaatgctgacatagtagtcattgtaatgccattagctgcccctctttga |
241 |
Q |
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| T |
2623754 |
aaatcaaagggatactcacattgcgccgcctccagctggaccaattaccttgcatgctgacatagcagttatgcaaaggccatttgctacacctctttga |
2623655 |
T |
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| Q |
242 |
tgttgttcctg |
252 |
Q |
| |
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||||| ||||| |
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| T |
2623654 |
tgttgatcctg |
2623644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 140 - 251
Target Start/End: Original strand, 26367915 - 26368026
Alignment:
| Q |
140 |
ataaatcaaagggaaactcacaatgcaccgcctccagcaggacctattgttttgaatgctgacatagtagtcattgtaatgccattagctgcccctcttt |
239 |
Q |
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||||||||| || | ||||||| |||||| |||||||| ||||| |||||||||||| |||||| |||||| | ||||||||||||||||||||||| |
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| T |
26367915 |
ataaatcaatggtacactcacactgcaccacctccagctggaccaattgttttgaatattgacattccagtcatagcaatgccattagctgcccctcttt |
26368014 |
T |
|
| Q |
240 |
gatgttgttcct |
251 |
Q |
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|||||||||||| |
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| T |
26368015 |
gatgttgttcct |
26368026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 252
Target Start/End: Original strand, 16518152 - 16518249
Alignment:
| Q |
155 |
actcacaatgcaccgcctccagcaggacctattgttttgaatgctgacatagtagtcattgtaatgccattagctgcccctctttgatgttgttcctg |
252 |
Q |
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||||||| || ||| ||| ||||||| || || | ||||||| ||||||| ||||| | |||||||||||| ||||||||||| ||||||||||| |
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| T |
16518152 |
actcacattgtaccacctgcagcaggtccaatcgctttgaatagagacatagctgtcatagaaatgccattagcagcccctctttggtgttgttcctg |
16518249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 252
Target Start/End: Original strand, 16526757 - 16526789
Alignment:
| Q |
220 |
gccattagctgcccctctttgatgttgttcctg |
252 |
Q |
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||||||||||||||||||||| ||||||||||| |
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| T |
16526757 |
gccattagctgcccctctttggtgttgttcctg |
16526789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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