View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1957_low_29 (Length: 263)
Name: NF1957_low_29
Description: NF1957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1957_low_29 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 159; Significance: 9e-85; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 11663996 - 11664178
Alignment:
| Q |
1 |
tgagtggcacataaattggtgtataaatgtggatatgtaaccaaaaaatgtgggtatattgcggttatttaggagggtagaaatgatctttcaaaacaca |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
11663996 |
tgagtggcacataaattggtgtataaacgtggatatgtaaccaaaaaacgtgggtatattgcggttatttatgagggtagaaatggtctttcaaaacaca |
11664095 |
T |
|
| Q |
101 |
gaggatgttaaccgccgagaataaataaaacccaccctttttgttgggaataaaaacaatgcagtatagtgtaaaagaaaatt |
183 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11664096 |
gaggatgttaactgccgggaataaataaaacccaccctttttgttgggaataaaaacaatgcagtatagtgtaaaagaaaatt |
11664178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 51 - 244
Target Start/End: Complemental strand, 38510785 - 38510593
Alignment:
| Q |
51 |
tgggtatattgcggttatttaggagggtagaaatgatctttcaaaacacagaggatgttaaccgccgagaataaataaaacccaccctttttgttgggaa |
150 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||| |||||||||| | | |||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
38510785 |
tgggtatactgcggttatttaggagggtaaaaatggtctttcaaaatataaaggatgttaaccgccgggaataaataaaacccaccctttttgttgggaa |
38510686 |
T |
|
| Q |
151 |
taaaaacaatgcagtatagtgtaaaagaaaattaccaggaataattcattctctggattatttttgggtgcatgtttaccaaatatgggaataa |
244 |
Q |
| |
|
||||||||||||| |||||||||||| || ||| || ||||||||||||| ||| | |||||||| |||||||| ||||||| |||||||||| |
|
|
| T |
38510685 |
taaaaacaatgcaatatagtgtaaaa-aacattgccgggaataattcatttcctgaaatatttttgtgtgcatgtctaccaaacatgggaataa |
38510593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 244
Target Start/End: Original strand, 11664176 - 11664210
Alignment:
| Q |
210 |
atttttgggtgcatgtttaccaaatatgggaataa |
244 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |
|
|
| T |
11664176 |
atttttgggtgcatgtctaccaaatatgggaataa |
11664210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 13767996 - 13768240
Alignment:
| Q |
1 |
tgagtggcacataaattggtgtataaatgtggatatgtaaccaaaaaatgtgggtatattgcgg---ttatttaggagggtagaaatgatctttcaaaac |
97 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
13767996 |
tgagtggcacataaattggtgtataaacgtggatatgtaaccaaaaaacgtgggtatattgcggcggttatttaggagggtagaaatggtctttcaaaac |
13768095 |
T |
|
| Q |
98 |
acagaggatgttaaccgccgagaataaataaaacccaccctttttgttgggaataaaaacaatgcagtatagtgtaaaagaaaattaccaggaataattc |
197 |
Q |
| |
|
| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||| |
|
|
| T |
13768096 |
agagaggatgttaaccgccgggaataaataaaaccca-cctttttgttgggaataaaaacaatgcagtataatgtaaaagaaaattatc-ggaataattc |
13768193 |
T |
|
| Q |
198 |
attctctggattatttttgggtgcatgtttaccaaatatgggaataa |
244 |
Q |
| |
|
|||| ||| |||||| || ||||| | |||||||||||||||||| |
|
|
| T |
13768194 |
attccctgaattattgttttatgcatctctaccaaatatgggaataa |
13768240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 129; Significance: 7e-67; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 4 - 244
Target Start/End: Original strand, 17902057 - 17902300
Alignment:
| Q |
4 |
gtggcacataaattggtgtataaatgt---ggatatgtaaccaaa--aaatgtgggtatattgcggttatttaggagggtagaaatgatctttcaaaaca |
98 |
Q |
| |
|
||||||||||||||||| |||||| | ||||||||||||||| ||| |||||||| | ||||||||||||||||||| ||| | |||||||||||| |
|
|
| T |
17902057 |
gtggcacataaattggtatataaacataatggatatgtaaccaaagaaaacgtgggtatct-gcggttatttaggagggtaaaaacggtctttcaaaaca |
17902155 |
T |
|
| Q |
99 |
cagaggatgttaaccgccgagaataaataaaacccaccctttttgttgggaataaaaacaatgcagtatagtgtaaaagaaaattaccaggaataattca |
198 |
Q |
| |
|
|| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| || || ||||||||||| |
|
|
| T |
17902156 |
caaaggatgttaaccgccgggaataaataaaacccaccctttttgctgggaataaaaacaatgcagtatagtgtaaaa-aaagttgccgggaataattca |
17902254 |
T |
|
| Q |
199 |
ttctctggattatttttgggtgcatgtttaccaaatatgggaataa |
244 |
Q |
| |
|
||| ||||| |||||||| |||||||| ||||||| |||||||||| |
|
|
| T |
17902255 |
ttccctggaatatttttgtgtgcatgtctaccaaacatgggaataa |
17902300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 59 - 170
Target Start/End: Original strand, 18928607 - 18928718
Alignment:
| Q |
59 |
ttgcggttatttaggagggtagaaatgatctttcaaaacacagaggatgttaaccgccgagaataaataaaacccaccctttttgttgggaataaaaaca |
158 |
Q |
| |
|
|||| |||| ||||||||||| ||| | |||||||||||||| || |||||||| || | |||||||||||||||| |||||| |||||||||||| | |
|
|
| T |
18928607 |
ttgcagttacttaggagggtataaagggtctttcaaaacacaaagtatgttaactgctgggaataaataaaacccataatttttgctgggaataaaaata |
18928706 |
T |
|
| Q |
159 |
atgcagtatagt |
170 |
Q |
| |
|
| ||| |||||| |
|
|
| T |
18928707 |
aggcaatatagt |
18928718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 109; Significance: 6e-55; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 120 - 244
Target Start/End: Complemental strand, 35913619 - 35913496
Alignment:
| Q |
120 |
aataaataaaacccaccctttttgttgggaataaaaacaatgcagtatagtgtaaaagaaaattaccaggaataattcattctctggattatttttgggt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
35913619 |
aataaataaaacccaccctttttgttgggaataaaaacaatgcagtatagtgtaaaagaaaattaccaggaataattcattc-ctggattatttttgggt |
35913521 |
T |
|
| Q |
220 |
gcatgtttaccaaatatgggaataa |
244 |
Q |
| |
|
|||||| ||||||| |||||||||| |
|
|
| T |
35913520 |
gcatgtctaccaaacatgggaataa |
35913496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 29 - 244
Target Start/End: Complemental strand, 45355499 - 45355289
Alignment:
| Q |
29 |
gtggatatgtaaccaaa--aaatgtgggtatattgcggttatttaggagggtagaaatgatctttcaaaacacagaggatgttaaccgccgagaataaat |
126 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||| |||||| ||||||| |||||||||| ||||| |||||||| |
|
|
| T |
45355499 |
gtggatatgtaaccaaagaaaacgtgggtatattgcggtt--ttaggagggtagaaatggtctttctaaacacaaaggatgttaatcgccgggaataaat |
45355402 |
T |
|
| Q |
127 |
aaaacccaccctttttgttgggaataaaaacaatgcagtatagtgtaaaagaaaattaccaggaataattcattctctggattatttttgggtgcatgtt |
226 |
Q |
| |
|
||||||||||||||||| || | |||||||||||||||||||||||| || ||| | |||||||||||||| |||| |||||||| |||||||| |
|
|
| T |
45355401 |
aaaacccaccctttttgctgag----aaaacaatgcagtatagtgtaaaa-aatattgctgggaataattcattccttggaatatttttgtgtgcatgtc |
45355307 |
T |
|
| Q |
227 |
taccaaatatgggaataa |
244 |
Q |
| |
|
||||||| |||||||||| |
|
|
| T |
45355306 |
taccaaacatgggaataa |
45355289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 29 - 244
Target Start/End: Complemental strand, 45369240 - 45369030
Alignment:
| Q |
29 |
gtggatatgtaaccaaa--aaatgtgggtatattgcggttatttaggagggtagaaatgatctttcaaaacacagaggatgttaaccgccgagaataaat |
126 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||| |||||| ||||||| |||||||||| ||||| |||||||| |
|
|
| T |
45369240 |
gtggatatgtaaccaaagaaaacgtgggtatattgcggtt--ttaggagggtagaaatggtctttctaaacacaaaggatgttaatcgccgggaataaat |
45369143 |
T |
|
| Q |
127 |
aaaacccaccctttttgttgggaataaaaacaatgcagtatagtgtaaaagaaaattaccaggaataattcattctctggattatttttgggtgcatgtt |
226 |
Q |
| |
|
||||||||||||||||| || | |||||||||||||||||||||||| || ||| | |||||||||||||| |||| |||||||| |||||||| |
|
|
| T |
45369142 |
aaaacccaccctttttgctgag----aaaacaatgcagtatagtgtaaaa-aatattgctgggaataattcattccttggaatatttttgtgtgcatgtc |
45369048 |
T |
|
| Q |
227 |
taccaaatatgggaataa |
244 |
Q |
| |
|
||||||| |||||||||| |
|
|
| T |
45369047 |
taccaaacatgggaataa |
45369030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 35913711 - 35913618
Alignment:
| Q |
1 |
tgagtggcacataaattggtgtataaatgtggatatgtaaccaaaaaatgtgggtatattgcggttatttaggagggtagaaatgatctttcaaa |
95 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
35913711 |
tgagtggcacataaattggtgtataaacgtg-atatgtaaccaaaaaacgtgagtatattgcggttatttaggagggtagaaatggtctttcaaa |
35913618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University