View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1957_low_30 (Length: 250)
Name: NF1957_low_30
Description: NF1957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1957_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 119 - 244
Target Start/End: Original strand, 45606608 - 45606733
Alignment:
| Q |
119 |
gtattcctgcctcataatttgaaaacgtgttccccttactcaaattcacccttgcagactcaaagggtgccaacatgaaaaatgttggaccctaatgtat |
218 |
Q |
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| T |
45606608 |
gtattcctgcctcataatttgaaaacgtgttccccttactcaaattcacccttgcagactcaaagggtgccaacatgaaaaatgttggaccctaatgtat |
45606707 |
T |
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| Q |
219 |
cattgtttaacatatttctctgctcc |
244 |
Q |
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| T |
45606708 |
cattgtttaacatatatctttgctcc |
45606733 |
T |
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Target: chr1; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 45606490 - 45606546
Alignment:
| Q |
1 |
cataagcagacttgtatatataaaggaagaaatgtttcatttttccaacataagttg |
57 |
Q |
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| T |
45606490 |
cataagcagacttgtatatataaaggaagaaatgtttcatttttccaacataagttg |
45606546 |
T |
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