View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1957_low_31 (Length: 240)
Name: NF1957_low_31
Description: NF1957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1957_low_31 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 3 - 240
Target Start/End: Original strand, 10321100 - 10321339
Alignment:
| Q |
3 |
attattcccttgcaattaaactagtttatcatctattaaagtttttgtaaaaacatctaccnnnnnnngttttgtaaaaaattcatatattaaagtgagt |
102 |
Q |
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| T |
10321100 |
attattcccttgcaattaaactagtttatcatctattaaagtttttgtaaaaacatctaccaaaaaaagttttgtaaaaaattcatatattaaagtgagt |
10321199 |
T |
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| Q |
103 |
attaatttattcttttgaccaaattaaagttaaaaatatattaacttgttttatggtggacaaactacaacacct--aagatatataaaaataaatggaa |
200 |
Q |
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| T |
10321200 |
attaatttattcttttgaccaaattaaagttaaaaatatattaatttgttttatggtggacaaactacaacaccttatagatatataaaaataaatggaa |
10321299 |
T |
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| Q |
201 |
acaagaataaaaagagaaatggagcatagacaaattcttc |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
10321300 |
acaagaataaaaagagaaatggagcatagacaaattcttc |
10321339 |
T |
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