View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1957_low_35 (Length: 217)
Name: NF1957_low_35
Description: NF1957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1957_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 41 - 197
Target Start/End: Complemental strand, 29796862 - 29796706
Alignment:
| Q |
41 |
ggacatcatcatggcatgctaaccaaatgagaaattttggcatttcaagcttcctttatagccttatttgtgtaccattttcaaaattagaatttagctt |
140 |
Q |
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| T |
29796862 |
ggacatcatcatggcatgctaaccaaatgagaaattttggcatttcaagcttcatttatagccttatttgtgtaccattttcaaaattagaatttagctt |
29796763 |
T |
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| Q |
141 |
catttgtgtaggttccattaacattttccagccaaatgacaacatcagtgactttag |
197 |
Q |
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| T |
29796762 |
catttgtgtaggctccattaacattttccagccaaatgacaacatcagtgactttag |
29796706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 99 - 178
Target Start/End: Original strand, 34082280 - 34082360
Alignment:
| Q |
99 |
tagccttatttgtgtaccattttcaaaattagaatttagcttcatttgtgtagg-ttccattaacattttccagccaaatg |
178 |
Q |
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| T |
34082280 |
tagctttatttgtgtaccattttcaagattagaatttagcttcatttgtgtaggttttcattaacatttttcagccaaatg |
34082360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 73
Target Start/End: Original strand, 34082248 - 34082277
Alignment:
| Q |
44 |
catcatcatggcatgctaaccaaatgagaa |
73 |
Q |
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| T |
34082248 |
catcatcatggcatgctaaccaaatgagaa |
34082277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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