View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1957_low_36 (Length: 215)
Name: NF1957_low_36
Description: NF1957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1957_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 163; Significance: 3e-87; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 15 - 197
Target Start/End: Complemental strand, 581180 - 580998
Alignment:
| Q |
15 |
agaacctgtgccttttgaagcaaggttaagagaatatcaacactaacaaatccaacctccaaatgggtcaacattggaaatacacatagcttttttggta |
114 |
Q |
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| T |
581180 |
agaaccggtgccttttgaagcaaggttaagagaatatcaacactaacgaagccaacctccaaatgggtcaacattggaaatacacatagcttttttggta |
581081 |
T |
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| Q |
115 |
gcatctttttcagatccagaacctggaatggatgacgcaacgaaactgatttatattataacaaaaggattaaactcataaat |
197 |
Q |
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| T |
581080 |
gcatctttttcagatccagaacctggaatggatgacacaacgaaactgatttatattacaacaaaaggattaaactcataaat |
580998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 1214828 - 1214741
Alignment:
| Q |
15 |
agaacctgtgccttttgaagcaaggttaagagaatatcaacactaacaaatccaacctccaaatgggtcaacattggaaatacacata |
102 |
Q |
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| T |
1214828 |
agaaccggtgtcttttcaagcaaggctaacagaatatcaacactaagtaagccaacatccaaatgggccaacattggaaatacacata |
1214741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 119
Target Start/End: Complemental strand, 1207609 - 1207516
Alignment:
| Q |
26 |
cttttgaagcaaggttaagagaatatcaacactaacaaatccaacctccaaatgggtcaacattggaaatacacatagcttttttggtagcatc |
119 |
Q |
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| T |
1207609 |
cttttgaagtaatgctaagagaatttcgacactaactaagccaacctccaaatcggtcaacattggaaatacgcacagctcttttggttgcatc |
1207516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 103
Target Start/End: Complemental strand, 1201412 - 1201351
Alignment:
| Q |
42 |
aagagaatatcaacactaacaaatccaacctccaaatgggtcaacattggaaatacacatag |
103 |
Q |
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| T |
1201412 |
aagagattatcaacactaatcaagccaacctccaaatgtgtcaacgttgaaaatacacatag |
1201351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 26 - 106
Target Start/End: Original strand, 8188771 - 8188851
Alignment:
| Q |
26 |
cttttgaagcaaggttaagagaatatcaacactaacaaatccaacctccaaatgggtcaacattggaaatacacatagctt |
106 |
Q |
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| T |
8188771 |
cttttgaagcaaggctaacagaatattaacactaactaaaccaacctccaaatcggtcaacattggaaatacacatagctt |
8188851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 171
Target Start/End: Original strand, 8188864 - 8188904
Alignment:
| Q |
131 |
cagaacctggaatggatgacgcaacgaaactgatttatatt |
171 |
Q |
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| T |
8188864 |
cagaacctggaatgaatggcacaacgaaactgatttatatt |
8188904 |
T |
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