View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1957_low_6 (Length: 555)
Name: NF1957_low_6
Description: NF1957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1957_low_6 |
 | |
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| [»] chr3 (25 HSPs) |
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|
Alignment Details
Target: chr3 (Bit Score: 535; Significance: 0; HSPs: 25)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 9 - 555
Target Start/End: Complemental strand, 19854476 - 19853930
Alignment:
| Q |
9 |
acatcatcatcaacaatattatcacccttgctagtttttgaaccgtcatcactagattttccagaagcagcagtgccacagccaacaagtttaggaacct |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19854476 |
acatcatcatcaacaatattatcacccttgctagtttttgaaccgtcgtcactagattttccagaagcagcagtgccacagccaacaagtttaggaacct |
19854377 |
T |
|
| Q |
109 |
tggcatgtggtctatattttgaacttgcaattctcttccggggcacatcattcttaacgaaaccttgaggacccaatactgatttctcccaccacttttc |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19854376 |
tggcatgtggtctatattttgaacttgcaattctcttccggggcacatcattcttaacgaaaccttgaggacccaatactgatttctcccaccacttttc |
19854277 |
T |
|
| Q |
209 |
ataacaagtggtaacaccagctttaaaagacctagatggaaaatataaacttgtatcagataagggtctggtgtaatttttccatgcaatgacttgagtc |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19854276 |
ataacaagtggtaacaccagctttaaaagacctagatggaaaatataaacttgtatcagataagggtctggtgtaatttttccatgcaatgacttgagtc |
19854177 |
T |
|
| Q |
309 |
tcattgagtctggacacataaccaggaacatcttgatcaaatccaaattgcctagcaactctatgtggtagatattgctctataaactcaaacccaacta |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19854176 |
tcattgagtctggacacataaccaggaacatcttgatcaaatccaaattgcctagcaactctatgtggtagatattgctctataaactcaaacccaacta |
19854077 |
T |
|
| Q |
409 |
gctcataaactctcaagcatgtgacaaataagagcatttgtttatccaccaaatcgttcttaaatggtacccaaatttcatcattcgggtaaaacattcc |
508 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
19854076 |
gctcagaaactctcaagcatgtgacaaataagagcatttgtttatccaccaaatcgttcttaaatggtacccgaatttcatcattcgggtaaaacattcc |
19853977 |
T |
|
| Q |
509 |
acacttatgagcatagctaacataaggacgccaaataaaatcatcca |
555 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19853976 |
acacttatgagcatagctaacataaggacgccaaataaaatcatcca |
19853930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 9 - 553
Target Start/End: Complemental strand, 19859051 - 19858504
Alignment:
| Q |
9 |
acatcatcatcaacaatattatcacccttgctagtttttg-aaccgtcatcactagattttccagaagcagcagtgccacagccaacaagtttaggaacc |
107 |
Q |
| |
|
||||| ||||||||||||||| |||| ||| |||||||| |||| ||||||| |||||||||| ||| | ||||| |||| || || | | |||| | |
|
|
| T |
19859051 |
acatcctcatcaacaatattaccaccgttg-tagtttttccaaccatcatcacaagattttccaaaagtaacagtgtcacaagcagcatgatccggaatc |
19858953 |
T |
|
| Q |
108 |
ttggcatgtggtctatatttt---gaacttgcaattctcttccggggcacatcattcttaacgaaaccttgaggacccaatactgatttctcccaccact |
204 |
Q |
| |
|
| |||||||||||| ||||| |||||| || |||| ||| | |||||| ||||||||||| || | || ||||||||||| |||||||||||||||| |
|
|
| T |
19858952 |
tcagcatgtggtctacattttaatgaacttacacttcttttctgtggcacagcattcttaacggaaacctggggacccaataccgatttctcccaccact |
19858853 |
T |
|
| Q |
205 |
tttcataacaagtggtaacaccagctttaaaagacctagatggaaaatataaacttgtatcagataagggtctggtgtaatttttccatgcaatgacttg |
304 |
Q |
| |
|
|| ||||||| ||| ||| | | || | |||| | |||||| |||| ||||||||||||||| | |||||||||| |||||||||||| ||||||||||| |
|
|
| T |
19858852 |
ttgcataacatgtgataatatcggcctcaaaaaatctagattgaaagtataaacttgtatcataaaagggtctggagtaatttttccaagcaatgacttg |
19858753 |
T |
|
| Q |
305 |
agtctcattgagtctggacacataaccaggaacatcttgatcaaatccaaattgcctagcaactctatgtggtagatattgctctataaactcaaaccca |
404 |
Q |
| |
|
|| ||||||| ||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19858752 |
agattcattgaatctagacacataaccaggaacatcttgatcaaattcaaattgcatagcaactctatgtggtagatattgctctataaactcaaaccca |
19858653 |
T |
|
| Q |
405 |
actagctcataaactctcaagcatgtgacaaataagagcatttgtttatccaccaaatcgttcttaaatggtacccaaatttcatcattcgggtaaaaca |
504 |
Q |
| |
|
||||||||| |||||||||| ||| | | |||| |||||||||||||||| |||||||| |||| | ||| |||||||||||| ||||| || ||||||| |
|
|
| T |
19858652 |
actagctcagaaactctcaaacatataataaatgagagcatttgtttatcgaccaaatctttctaatatgatacccaaatttcgtcatttggataaaaca |
19858553 |
T |
|
| Q |
505 |
ttccacacttatgagcatagctaacataaggacgccaaataaaatcatc |
553 |
Q |
| |
|
||||||||||| ||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
19858552 |
gtccacacttatctgcatatctaacgtaaggacgccaaataaaatcatc |
19858504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 158 - 553
Target Start/End: Original strand, 24839265 - 24839660
Alignment:
| Q |
158 |
attcttaacgaaaccttgaggacccaatactgatttctcccaccacttttcataacaagtggtaacaccagctttaaaagacctagatggaaaatataaa |
257 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |||||||||| | |||| | ||||| |||||| | |||| | |||||||||||||||||| |
|
|
| T |
24839265 |
attcttaacgaaaccttgaggacgtaatactgatttcgtccaccactttgcgtaacgtgaggtaataccagcctcaaaatatctagatggaaaatataaa |
24839364 |
T |
|
| Q |
258 |
cttgtatcagataagggtctggtgtaatttttccatgcaatgacttgagtctcattgagtctggacacataaccaggaacatcttgatcaaatccaaatt |
357 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
24839365 |
cttgtatcagataagggtctggagtaatttttccaagcaatggctttagtctcattgagtctagacacataaccaggaacatcttgatcaaatccgaatt |
24839464 |
T |
|
| Q |
358 |
gcctagcaactctatgtggtagatattgctctataaactcaaacccaactagctcataaactctcaagcatgtgacaaataagagcatttgtttatccac |
457 |
Q |
| |
|
|| ||||||||||||||||||||||||| |||||| ||||||| |||||||||||| ||||||||||| || | |||||| |||||||||||| | || |
|
|
| T |
24839465 |
gcatagcaactctatgtggtagatattgttctatagactcaaatccaactagctcagaaactctcaagaatataacaaatgagagcatttgttctactac |
24839564 |
T |
|
| Q |
458 |
caaatcgttcttaaatggtacccaaatttcatcattcgggtaaaacattccacacttatgagcatagctaacataaggacgccaaataaaatcatc |
553 |
Q |
| |
|
|||||| ||||||||||||||| || ||||||| || || ||||||| ||||||||||| | |||| ||||||||||||||||||||||||||| |
|
|
| T |
24839565 |
caaatctttcttaaatggtaccaaagtttcatcctttggataaaacactccacacttatcaacatattgaacataaggacgccaaataaaatcatc |
24839660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 181 - 551
Target Start/End: Complemental strand, 19951928 - 19951558
Alignment:
| Q |
181 |
ccaatactgatttctcccaccacttttcataacaagtggtaacaccagctttaaaagacctagatggaaaatataaacttgtatcagataagggtctggt |
280 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||| || || || |||| | |||| | ||||||||||| ||| || ||||||||| ||| ||| |
|
|
| T |
19951928 |
ccaatactgattgctcccaccactttgcataacgcatgctagcatcagcctcaaaaatttttgatggaaaatacaaatttttatcagatatgggcctgca |
19951829 |
T |
|
| Q |
281 |
gtaatttttccatgcaatgacttgagtctcattgagtctggacacataaccaggaacatcttgatcaaatccaaattgcctagcaactctatgtggtaga |
380 |
Q |
| |
|
||| |||||||| ||||| |||| ||| | ||||| || | |||||||| |||||||||||||| | | |||||||| |||||||||||||||| ||| |
|
|
| T |
19951828 |
gtagtttttccaagcaatcactttagttttattgaacctaggcacataactcggaacatcttgatccattgcaaattgcatagcaactctatgtggaaga |
19951729 |
T |
|
| Q |
381 |
tattgctctataaactcaaacccaactagctcataaactctcaagcatgtgacaaataagagcatttgtttatccaccaaatcgttcttaaatggtaccc |
480 |
Q |
| |
|
|||||||||||| | || | |||||||||||| |||||||||||||| | |||||| | | |||||||| |||||||||||| ||||||||||| ||| |
|
|
| T |
19951728 |
tattgctctatagagtcgataccaactagctcagaaactctcaagcatataacaaatgacaacatttgttgatccaccaaatctttcttaaatggcacca |
19951629 |
T |
|
| Q |
481 |
aaatttcatcattcgggtaaaacattccacacttatgagcatagctaacataaggacgccaaataaaatca |
551 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||| |||||| |||||||| |||||||||||||||||| |
|
|
| T |
19951628 |
aaatttcttcattcggataaaacattccacacttatcagcatatctaacatatggacgccaaataaaatca |
19951558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 178 - 553
Target Start/End: Complemental strand, 26647811 - 26647436
Alignment:
| Q |
178 |
gacccaatactgatttctcccaccacttttcataacaagtggtaacaccagctttaaaagacctagatggaaaatataaacttgtatcagataagggtct |
277 |
Q |
| |
|
||||||||||||||| | ||||||| || |||||| || |||||| | || | |||| | || ||||| ||||| ||||| ||||||||| | |||| |
|
|
| T |
26647811 |
gacccaatactgattgtttccaccaccttgcataacgggtagtaacatctgcctcaaaaaatctcgatgggaaatacaaactcctatcagatatgcgtct |
26647712 |
T |
|
| Q |
278 |
ggtgtaatttttccatgcaatgacttgagtctcattgagtctggacacataaccaggaacatcttgatcaaatccaaattgcctagcaactctatgtggt |
377 |
Q |
| |
|
||| |||||||| |||||| ||| ||||||||||| || | ||||| || |||||||||||||| | |||||||||| |||||||||||||||| |
|
|
| T |
26647711 |
acagtagtttttccaagcaatgtctttagtctcattgaatcgaggcacatcactcggaacatcttgatccattccaaattgcatagcaactctatgtggc |
26647612 |
T |
|
| Q |
378 |
agatattgctctataaactcaaacccaactagctcataaactctcaagcatgtgacaaataagagcatttgtttatccaccaaatcgttcttaaatggta |
477 |
Q |
| |
|
||||| || |||||| | || || ||||| |||||| |||||||||||||| | |||||| |||||||||||| ||| |||||||| ||||||||||||| |
|
|
| T |
26647611 |
agatactgttctatagagtcgaatccaacaagctcagaaactctcaagcatataacaaatgagagcatttgttcatcaaccaaatctttcttaaatggta |
26647512 |
T |
|
| Q |
478 |
cccaaatttcatcattcgggtaaaacattccacacttatgagcatagctaacataaggacgccaaataaaatcatc |
553 |
Q |
| |
|
|| ||||||||||||| || ||||||| | ||||||||| |||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
26647511 |
ccgaaatttcatcatttggataaaacaattcacacttatcagcatatctaacataaggacgccaaagaaaatcatc |
26647436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 305 - 553
Target Start/End: Complemental strand, 26653828 - 26653583
Alignment:
| Q |
305 |
agtctcattgagtctggacacataaccaggaacatcttgatcaaatccaaattgcctagcaactctatgtggtagatattgctctataaactcaaaccca |
404 |
Q |
| |
|
||||||||||| || | |||||||| ||||||||||| |||| |||||||||| |||||||||||||||| ||||||||||| ||| ||||||| ||| |
|
|
| T |
26653828 |
agtctcattgaacctagccacataacttggaacatcttggtcaattccaaattgcatagcaactctatgtggaagatattgctcaatagactcaaatcca |
26653729 |
T |
|
| Q |
405 |
actagctcataaactctcaagcatgtgacaaataagagcatttgtttatccaccaaatcgttcttaaatggtacccaaatttcatcattcgggtaaaaca |
504 |
Q |
| |
|
||||||||| ||||||||||||| | |||||| ||||||| | | ||| ||||||| ||||||||||||||||||||||||| ||| || ||||||| |
|
|
| T |
26653728 |
actagctcagcaactctcaagcatataacaaatgagagcatgtttgtat---ccaaatccttcttaaatggtacccaaatttcattatttggataaaaca |
26653632 |
T |
|
| Q |
505 |
ttccacacttatgagcatagctaacataaggacgccaaataaaatcatc |
553 |
Q |
| |
|
|||||||||| | || ||| |||||||| |||||||||| ||||||||| |
|
|
| T |
26653631 |
ttccacacttgttaggatatctaacatatggacgccaaagaaaatcatc |
26653583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 183 - 555
Target Start/End: Complemental strand, 19956886 - 19956517
Alignment:
| Q |
183 |
aatactgatttctcccaccacttttcataacaagtggtaacaccagctttaaaagacctagatggaaaatataaacttgtatcagataagggtctggtgt |
282 |
Q |
| |
|
|||||||||| | |||||||| || |||||| ||||||||| | || | ||| | || | ||||||||| || || ||||| ||| ||||||| || |
|
|
| T |
19956886 |
aatactgattgcacccaccaccttgcataacgtgtggtaacatctgcctcaaataatcttggtggaaaatacaagtttttatcatatatgggtctgcagt |
19956787 |
T |
|
| Q |
283 |
aatttttccatgcaatgacttgagtctcattgagtctggacacataaccaggaacatcttgatcaaatccaaattgcctagcaactctatgtggtagata |
382 |
Q |
| |
|
| |||||||| |||||| || ||||||||||| || | |||||||| |||||||||||||||| |||||||||| |||||||||||||||| ||||| |
|
|
| T |
19956786 |
agtttttccaagcaatgtatttagtctcattgaacctagctacataacccggaacatcttgatcaattccaaattgcatagcaactctatgtggaagata |
19956687 |
T |
|
| Q |
383 |
ttgctctataaactcaaacccaactagctcataaactctcaagcatgtgacaaataagagcatttgtttatccaccaaatcgttcttaaatggtacccaa |
482 |
Q |
| |
|
|||||||||| ||||||| ||||| ||||| |||||||||||||| | |||||| ||| |||| | ||| ||||||| ||||||||||||||| || |
|
|
| T |
19956686 |
ttgctctatagactcaaatccaaccagctcggaaactctcaagcatataacaaatgagataatttttgtat---ccaaatccttcttaaatggtaccaaa |
19956590 |
T |
|
| Q |
483 |
atttcatcattcgggtaaaacattccacacttatgagcatagctaacataaggacgccaaataaaatcatcca |
555 |
Q |
| |
|
||||||||||| || ||||| | ||||| ||||||| ||| | |||||| |||||||||| ||| ||||||| |
|
|
| T |
19956589 |
atttcatcatttggataaaatagcccacatttatgagaatatcgaacatatggacgccaaagaaagtcatcca |
19956517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 332 - 552
Target Start/End: Complemental strand, 19944370 - 19944150
Alignment:
| Q |
332 |
aggaacatcttgatcaaatccaaattgcctagcaactctatgtggtagatattgctctataaactcaaacccaactagctcataaactctcaagcatgtg |
431 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||||||| |||||||||||| |||||| ||||||| ||||||||||| ||||||||||| || | |
|
|
| T |
19944370 |
aggaacatcttgatcaaatccgaattgcatagcaactctatatggtagatattgttctatagactcaaatccaactagctcggaaactctcaagaatata |
19944271 |
T |
|
| Q |
432 |
acaaataagagcatttgtttatccaccaaatcgttcttaaatggtacccaaatttcatcattcgggtaaaacattccacacttatgagcatagctaacat |
531 |
Q |
| |
|
|||||| |||||||||||| | |||||||| || |||||||||||| || |||||||||| || ||| | | ||||||||||| |||||| ||||| |
|
|
| T |
19944270 |
acaaatgagagcatttgttctactaccaaatcttttttaaatggtaccaaagtttcatcatttggataatatactccacacttatcagcatattgaacat |
19944171 |
T |
|
| Q |
532 |
aaggacgccaaataaaatcat |
552 |
Q |
| |
|
||||||| ||||||||||||| |
|
|
| T |
19944170 |
aaggacggcaaataaaatcat |
19944150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 285 - 554
Target Start/End: Complemental strand, 19819260 - 19818994
Alignment:
| Q |
285 |
tttttccatgcaatgacttgagtctcattgagtctggacacataaccaggaacatcttgatcaaatccaaattgcctagcaactctatgtggtagatatt |
384 |
Q |
| |
|
|||||||| |||||| || ||||||||||| || | |||||||||||||||||||||||||| |||||| ||| |||||||||||||||| ||||||| |
|
|
| T |
19819260 |
tttttccaagcaatgtatttagtctcattgaacctagccacataaccaggaacatcttgatcaattccaaactgcatagcaactctatgtggaagatatt |
19819161 |
T |
|
| Q |
385 |
gctctataaactcaaacccaactagctcataaactctcaagcatgtgacaaataagagcatttgtttatccaccaaatcgttcttaaatggtacccaaat |
484 |
Q |
| |
|
||||||| ||||||| ||||| |||||| |||||||||| ||| | |||||| |||| |||| | ||| ||||||| |||||||||||||| |||| |
|
|
| T |
19819160 |
gctctatggactcaaaaccaacaagctcagaaactctcaaacatataacaaatgagagaatttttgtat---ccaaatccatcttaaatggtaccaaaat |
19819064 |
T |
|
| Q |
485 |
ttcatcattcgggtaaaacattccacacttatgagcatagctaacataaggacgccaaataaaatcatcc |
554 |
Q |
| |
|
| |||||||||| ||||||| ||||||||| || ||| | |||||| |||||||||| ||| |||||| |
|
|
| T |
19819063 |
tccatcattcggataaaacagctcacacttatcagaatatcgaacatatggacgccaaagaaagtcatcc |
19818994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 323 - 532
Target Start/End: Original strand, 20033790 - 20033999
Alignment:
| Q |
323 |
cacataaccaggaacatcttgatcaaatccaaattgcctagcaactctatgtggtagatattgctctataaactcaaacccaactagctcataaactctc |
422 |
Q |
| |
|
|||||||| |||||||||||||| | |||||||||| |||||||||||||||| ||||||||||||||| | || | |||||| ||||| | |||||| |
|
|
| T |
20033790 |
cacataacttggaacatcttgatccattccaaattgcatagcaactctatgtggaagatattgctctatagagtcgataccaacttgctcagacactctc |
20033889 |
T |
|
| Q |
423 |
aagcatgtgacaaataagagcatttgtttatccaccaaatcgttcttaaatggtacccaaatttcatcattcgggtaaaacattccacacttatgagcat |
522 |
Q |
| |
|
| |||| | |||||| | |||||||||| |||||||||||| |||||||||||||| |||||||||||||||| ||||||| || |||||||| ||||| |
|
|
| T |
20033890 |
atgcatataacaaatgacagcatttgttgatccaccaaatcattcttaaatggtactgaaatttcatcattcggataaaacagtctacacttatcagcat |
20033989 |
T |
|
| Q |
523 |
agctaacata |
532 |
Q |
| |
|
| |||||||| |
|
|
| T |
20033990 |
atctaacata |
20033999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 285 - 555
Target Start/End: Complemental strand, 19812983 - 19812716
Alignment:
| Q |
285 |
tttttccatgcaatgacttgagtctcattgagtctggacacataaccaggaacatcttgatcaaatccaaattgcctagcaactctatgtggtagatatt |
384 |
Q |
| |
|
|||||||||||||| |||| ||| | ||||| || | |||||||| |||||||||||||||| |||||||||| |||||||||||||||| ||||||| |
|
|
| T |
19812983 |
tttttccatgcaatcactttagttttattgaacctaggcacataacttggaacatcttgatcaattccaaattgcatagcaactctatgtggaagatatt |
19812884 |
T |
|
| Q |
385 |
gctctataaactcaaacccaactagctcataaactctcaagcatgtgacaaataagagcatttgtttatccaccaaatcgttcttaaatggtacccaaat |
484 |
Q |
| |
|
|||||||| | || | |||||||||||| || |||||||||| | |||||| ||||||||| |||| | ||||| | || ||||||||| |||| |
|
|
| T |
19812883 |
gctctatagagtcgataccaactagctcagaacatctcaagcatataacaaatgagagcattttgttat---ctaaatctattttgaatggtaccgaaat |
19812787 |
T |
|
| Q |
485 |
ttcatcattcgggtaaaacattccacacttatgagcatagctaacataaggacgccaaataaaatcatcca |
555 |
Q |
| |
|
||||||||| || ||||||| | ||||||||| ||||| |||||||| |||||||||| ||||||||||| |
|
|
| T |
19812786 |
ttcatcatttggataaaacaatgcacacttatcggcatatctaacatatggacgccaaagaaaatcatcca |
19812716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 285 - 554
Target Start/End: Complemental strand, 19832570 - 19832303
Alignment:
| Q |
285 |
tttttccatgcaatgacttgagtctcattgagtctggacacataaccaggaacatcttgatcaaatccaaattgcctagcaactctatgtggtagatatt |
384 |
Q |
| |
|
|||||||| |||||| || ||||||||||| || | |||||||||||||||||||||||||| ||||| ||| |||||||||||||||| ||||||| |
|
|
| T |
19832570 |
tttttccaagcaatgtatttagtctcattgaacctagccacataaccaggaacatcttgatcaattccaatctgcatagcaactctatgtggaagatatt |
19832471 |
T |
|
| Q |
385 |
gctctataaactcaaacccaactagctcataaactctcaagcatgtgacaaataagagcatttgtt-tatccaccaaatcgttcttaaatggtacccaaa |
483 |
Q |
| |
|
||||||| ||||||| ||||| |||||| |||||||||| ||| | |||||| |||| |||| || ||| ||||||| |||||||||||||| ||| |
|
|
| T |
19832470 |
gctctatggactcaaaaccaacaagctcagaaactctcaaacatataacaaatgagagaattttttgtat---ccaaatccatcttaaatggtaccaaaa |
19832374 |
T |
|
| Q |
484 |
tttcatcattcgggtaaaacattccacacttatgagcatagctaacataaggacgccaaataaaatcatcc |
554 |
Q |
| |
|
|| |||||||||| ||||||| ||||||||| || ||| | |||||| |||||||||| ||| |||||| |
|
|
| T |
19832373 |
ttccatcattcggataaaacagctcacacttatcagaatatcgaacatatggacgccaaagaaagtcatcc |
19832303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 282 - 553
Target Start/End: Original strand, 20015616 - 20015884
Alignment:
| Q |
282 |
taatttttccatgcaatgacttgagtctcattgagtctggacacataaccaggaacatcttgatcaaatccaaattgcctagcaactctatgtggtagat |
381 |
Q |
| |
|
|||| |||||| ||| ||| || ||||||||||| ||| | ||||| ||| |||||||||||||| | |||||||||| |||||||||| ||||| | || |
|
|
| T |
20015616 |
taatatttccaagcagtgattttagtctcattgaatctaggcacatcacctggaacatcttgatccattccaaattgcatagcaactctgtgtggcaaat |
20015715 |
T |
|
| Q |
382 |
attgctctataaactcaaacccaactagctcataaactctcaagcatgtgacaaataagagcatttgtttatccaccaaatcgttcttaaatggtaccca |
481 |
Q |
| |
|
| ||||||||| | ||||| ||||| ||||| ||||||| |||||| | |||||| ||||||||||||||| ||||||| |||||||||||||| | |
|
|
| T |
20015716 |
actgctctatagagtcaaatccaacaagctcggaaactcttaagcatataacaaatgagagcatttgtttat---ccaaatctttcttaaatggtacaaa |
20015812 |
T |
|
| Q |
482 |
aatttcatcattcgggtaaaacattccacacttatgagcatagctaacataaggacgccaaataaaatcatc |
553 |
Q |
| |
|
|| | ||||||| || ||||||| ||||||||| |||||| || | ||| |||||||||| ||||||||| |
|
|
| T |
20015813 |
aaatgcatcatttggataaaacaaatcacacttatcagcatatctgaaatatggacgccaaagaaaatcatc |
20015884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 323 - 553
Target Start/End: Complemental strand, 20046782 - 20046555
Alignment:
| Q |
323 |
cacataaccaggaacatcttgatcaaatccaaattgcctagcaactctatgtggtagatattgctctataaactcaaacccaactagctcataaactctc |
422 |
Q |
| |
|
|||||||| ||||||||||| |||| |||||||||| ||| |||||||||||| ||||| ||||||||| ||||||| ||||| |||||| |||||||| |
|
|
| T |
20046782 |
cacataactcggaacatcttggtcaagtccaaattgcatagaaactctatgtggaagatactgctctatagactcaaatccaacaagctcagaaactctc |
20046683 |
T |
|
| Q |
423 |
aagcatgtgacaaataagagcatttgtttatccaccaaatcgttcttaaatggtacccaaatttcatcattcgggtaaaacattccacacttatgagcat |
522 |
Q |
| |
|
| |||| | |||| | || |||| ||||| ||||||| ||||||||||||||||||||||| | ||| || ||||| ||||||||||| | || || |
|
|
| T |
20046682 |
aggcatatagaaaatgaaagtatttttttat---ccaaatccttcttaaatggtacccaaatttcgttatttggataaaaaattccacacttgtcaggat |
20046586 |
T |
|
| Q |
523 |
agctaacataaggacgccaaataaaatcatc |
553 |
Q |
| |
|
| |||||||| |||||||||| ||||||||| |
|
|
| T |
20046585 |
atctaacatatggacgccaaagaaaatcatc |
20046555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 285 - 555
Target Start/End: Complemental strand, 19839093 - 19838826
Alignment:
| Q |
285 |
tttttccatgcaatgacttgagtctcattgagtctggacacataaccaggaacatcttgatcaaatccaaattgcctagcaactctatgtggtagatatt |
384 |
Q |
| |
|
|||||||| |||||| || |||| |||||| || | ||||||||| |||||||||||||| | ||| |||||| |||||||||||||||| ||||||| |
|
|
| T |
19839093 |
tttttccaagcaatgtatttagtcacattgaacctagccacataacctggaacatcttgatccattccgaattgcatagcaactctatgtggaagatatt |
19838994 |
T |
|
| Q |
385 |
gctctataaactcaaacccaactagctcataaactctcaagcatgtgacaaataagagcatttgtttatccaccaaatcgttcttaaatggtacccaaat |
484 |
Q |
| |
|
|||||||| ||||||| ||||| ||||| ||||||| | |||| | |||||| ||| |||| | ||| | ||||| |||||||||||||| |||| |
|
|
| T |
19838993 |
gctctatagactcaaatccaacaagctcggaaactctaaggcatataacaaatgagataatttttgtat---ctaaatccctcttaaatggtaccaaaat |
19838897 |
T |
|
| Q |
485 |
ttcatcattcgggtaaaacattccacacttatgagcatagctaacataaggacgccaaataaaatcatcca |
555 |
Q |
| |
|
||||||||| || ||||||| | ||||||||| || ||| | |||||| |||||||||| ||| ||||||| |
|
|
| T |
19838896 |
ttcatcatttggataaaacagttcacacttatcagaatatcgaacatatggacgccaaagaaagtcatcca |
19838826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 387 - 552
Target Start/End: Complemental strand, 26652316 - 26652151
Alignment:
| Q |
387 |
tctataaactcaaacccaactagctcataaactctcaagcatgtgacaaataagagcatttgtttatccaccaaatcgttcttaaatggtacccaaattt |
486 |
Q |
| |
|
|||||| ||||||| |||||||||||| ||||||| ||||| | |||||| ||||||||||| ||||||||||||| ||||||||||||||| || || |
|
|
| T |
26652316 |
tctatagactcaaatccaactagctcagaaactctttagcatttaacaaatgagagcatttgtatatccaccaaatctttcttaaatggtaccaaagttc |
26652217 |
T |
|
| Q |
487 |
catcattcgggtaaaacattccacacttatgagcatagctaacataaggacgccaaataaaatcat |
552 |
Q |
| |
|
| ||||| || ||||||| | ||||||||| ||||| | |||||||||||||||||||||||||| |
|
|
| T |
26652216 |
cgtcatttggataaaacacttcacacttatctgcataccgaacataaggacgccaaataaaatcat |
26652151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 333 - 555
Target Start/End: Original strand, 20036069 - 20036288
Alignment:
| Q |
333 |
ggaacatcttgatcaaatccaaattgcctagcaactctatgtggtagatattgctctataaactcaaacccaactagctcataaactctcaagcatgtga |
432 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||| ||||||| ||||| |||||| |||| ||||||||| | | |
|
|
| T |
20036069 |
ggaacatcttgatcaattccaaattgcatagcaactctatgtggaagatattgctctatagactcaaatccaaccagctcagaaaccctcaagcatataa |
20036168 |
T |
|
| Q |
433 |
caaataagagcatttgtttatccaccaaatcgttcttaaatggtacccaaatttcatcattcgggtaaaacattccacacttatgagcatagctaacata |
532 |
Q |
| |
|
||||| ||| |||| | ||| |||||| ||| ||||||||||| || |||||||||| || |||| || | || |||||| || ||| | |||||| |
|
|
| T |
20036169 |
caaatgagataatttttgtat---ccaaatacttcgtaaatggtaccaaagtttcatcatttggataaagcagttcaaacttatcagaatatcgaacata |
20036265 |
T |
|
| Q |
533 |
aggacgccaaataaaatcatcca |
555 |
Q |
| |
|
|||||||||| ||| ||||||| |
|
|
| T |
20036266 |
tggacgccaaagaaagtcatcca |
20036288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 128 - 299
Target Start/End: Complemental strand, 19948681 - 19948510
Alignment:
| Q |
128 |
tgaacttgcaattctcttccggggcacatcattcttaacgaaaccttgaggacccaatactgatttctcccaccacttttcataacaagtggtaacacca |
227 |
Q |
| |
|
|||||||||| |||||||||| ||| || |||| |||||||||| |||| || |||||||||||| |||||||||| |||||| | ||||| |||| |
|
|
| T |
19948681 |
tgaacttgcacttctcttccgcggctcaaaattcgtaacgaaaccctgagaacgtaatactgatttcatccaccactttgcataacgcgcggtaatacca |
19948582 |
T |
|
| Q |
228 |
gctttaaaagacctagatggaaaatataaacttgtatcagataagggtctggtgtaatttttccatgcaatg |
299 |
Q |
| |
|
|| | |||| | |||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
19948581 |
gcctcaaaaaatttagatggaaaatataaacttctatcagataagggtctggagtaatttttccaagcaatg |
19948510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 323 - 555
Target Start/End: Complemental strand, 19849658 - 19849429
Alignment:
| Q |
323 |
cacataaccaggaacatcttgatcaaatccaaattgcctagcaactctatgtggtagatattgctctataaactcaaacccaactagctcataaactctc |
422 |
Q |
| |
|
|||||||| |||||||||||||| | ||| |||||| || ||||||||||| ||||||||||||||| ||||||| |||| |||||| |||||||| |
|
|
| T |
19849658 |
cacataacttggaacatcttgatccattccgaattgcaaagagactctatgtgggagatattgctctatagactcaaatccaatgagctcagaaactctc |
19849559 |
T |
|
| Q |
423 |
aagcatgtgacaaataagagcatttgtttatccaccaaatcgttcttaaatggtacccaaatttcatcattcgggtaaaacattccacacttatgagcat |
522 |
Q |
| |
|
|| ||||| |||||| | || |||| ||||| | |||| |||| ||| ||||||||| ||||||| || |||||||||||| | |||||||||| |
|
|
| T |
19849558 |
aaacatgtaacaaatgaaagtatttctttat---ctgaatctttctcaaacaacacccaaattccatcatttggataaaacattccataattatgagcat |
19849462 |
T |
|
| Q |
523 |
agctaacataaggacgccaaataaaatcatcca |
555 |
Q |
| |
|
| ||| |||| |||||||||| ||||||||||| |
|
|
| T |
19849461 |
atctagcatatggacgccaaagaaaatcatcca |
19849429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 396 - 553
Target Start/End: Complemental strand, 17115302 - 17115148
Alignment:
| Q |
396 |
tcaaacccaactagctcataaactctcaagcatgtgacaaataagagcatttgtttatccaccaaatcgttcttaaatggtacccaaatttcatcattcg |
495 |
Q |
| |
|
||||||||||| ||||| ||||||| || ||| | |||||| | | ||||| |||||||| |||| || || ||||||||| ||||||||||||| | |
|
|
| T |
17115302 |
tcaaacccaacaagctcggaaactctgaaacatataacaaatgacaacatttttttatcca---aatcttttttgaatggtaccaaaatttcatcatttg |
17115206 |
T |
|
| Q |
496 |
ggtaaaacattccacacttatgagcatagctaacataaggacgccaaataaaatcatc |
553 |
Q |
| |
|
| ||||||||||||||||||| |||||| |||| || |||||||||| ||||||||| |
|
|
| T |
17115205 |
gataaaacattccacacttatcagcatatctaatgtatggacgccaaagaaaatcatc |
17115148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 71
Target Start/End: Complemental strand, 19854623 - 19854561
Alignment:
| Q |
9 |
acatcatcatcaacaatattatcacccttgctagtttttgaaccgtcatcactagattttcca |
71 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||| |
|
|
| T |
19854623 |
acatcatcatcaacaatattatcacccttgttagttttaaaaccatcatcactagattttcca |
19854561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 25 - 106
Target Start/End: Complemental strand, 19854553 - 19854475
Alignment:
| Q |
25 |
tattatcacccttgctagtttttgaaccgtcatcactagattttccagaagcagcagtgccacagccaacaagtttaggaac |
106 |
Q |
| |
|
|||||||| ||||| ||||||||||||| ||||||||||||||| || |||| ||||| |||||||||||||||||||| |
|
|
| T |
19854553 |
tattatcatccttgttagtttttgaaccatcatcactagatttttcaatagcaacagtg---cagccaacaagtttaggaac |
19854475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 190 - 549
Target Start/End: Complemental strand, 19990320 - 19989967
Alignment:
| Q |
190 |
atttctcccaccacttttcataacaagtggtaacaccagctttaaaagacctagatggaaaatataaacttgtatcagataagggtctggtgtaattttt |
289 |
Q |
| |
|
|||||| |||||||| | |||||| |||||||||| | || | ||| |||| ||||||||||| | | | |||||||| ||| ||| |||| |||| |
|
|
| T |
19990320 |
atttcttccaccactctgcataacgagtggtaacatctgcctcaaacaacctcgatggaaaatacacatgttcatcagatatgggcctgttgtagttttc |
19990221 |
T |
|
| Q |
290 |
ccatgcaatgacttgagtctcattgagtctggacacataaccaggaacatcttgatcaaatccaaattgcctagcaactctatgtggtagatattgctct |
389 |
Q |
| |
|
||| |||| || ||||||||||| || | ||| |||| |||| ||||||||| | |||||||||| ||||||||||||||| |||||||| || |
|
|
| T |
19990220 |
ccaagcaacagattcagtctcattgaacctaggcacgtaacttggaatatcttgatccattccaaattgcaaagcaactctatgtgggagatattgaact |
19990121 |
T |
|
| Q |
390 |
ataaactcaaacccaactagctcataaactctcaagcatgtgacaaataagagcatttgtttatccaccaaatcgttcttaaatggtacccaaatttcat |
489 |
Q |
| |
|
| ||| |||| ||||| |||||| ||||||||| ||| | |||||| | ||||| | | || ||||||| ||||||| ||||||| || ||| |
|
|
| T |
19990120 |
acaaagtcaattccaacaagctcagaaactctcatacatctaacaaatgacagcat---tgtgtcatccaaatcagtcttaaa---tacccaagttccat |
19990027 |
T |
|
| Q |
490 |
cattcgggtaaaacattccacacttatgagcatagctaacataaggacgccaaataaaat |
549 |
Q |
| |
|
|||| || ||||||| | ||||||| | |||| | |||||||| |||||||||| ||||| |
|
|
| T |
19990026 |
catttggataaaacagttcacacttctcagcaaatctaacatatggacgccaaagaaaat |
19989967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 10 - 71
Target Start/End: Complemental strand, 19948817 - 19948756
Alignment:
| Q |
10 |
catcatcatcaacaatattatcacccttgctagtttttgaaccgtcatcactagattttcca |
71 |
Q |
| |
|
|||||||||| ||||| |||||||||| ||| || |||||||| |||||||||||||||||| |
|
|
| T |
19948817 |
catcatcatcgacaattttatcaccctggcttgtatttgaaccatcatcactagattttcca |
19948756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 19854752 - 19854693
Alignment:
| Q |
9 |
acatcatcatcaacaatattatcacccttgctagtttttgaaccgtcatcactagatttt |
68 |
Q |
| |
|
||||||| |||||||||| || |||||||||||||||||||||| |||| ||||| |||| |
|
|
| T |
19854752 |
acatcattatcaacaataataccacccttgctagtttttgaaccatcattactagttttt |
19854693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 19 - 549
Target Start/End: Original strand, 22688819 - 22689355
Alignment:
| Q |
19 |
caacaatattatcacccttgctagtttttgaaccgtcatcactagattttccagaagcagcagtgccacagccaacaagtttaggaaccttggcatgtgg |
118 |
Q |
| |
|
|||||||| ||||||| ||||| |||||| |||| ||||| |||||||||||| ||| | |||||||||| |||||||||||||||| || |||||| || |
|
|
| T |
22688819 |
caacaatactatcaccgttgctcgtttttaaaccatcatcgctagattttccaaaagtaacagtgccacaaccaacaagtttaggaatctcggcatgagg |
22688918 |
T |
|
| Q |
119 |
tctatattttga---acttgcaattctcttccggggcacatcattcttaacgaaaccttgaggacccaatactgatttctcccaccacttttcataacaa |
215 |
Q |
| |
|
|||||||||||| |||||||||| | ||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
22688919 |
tctatattttgatgaacttgcaattttgttctggggcacatcattcttaacaaaaccttgaggacccaatactgatttcttccaccactttgcataacaa |
22689018 |
T |
|
| Q |
216 |
gtggtaacaccagctttaaaagacctagatggaaaata---taaacttgtatcagataagggtctggtgtaatttttccatgcaatgacttgagtctcat |
312 |
Q |
| |
|
|||||||||||||| || ||| | || ||||||||||| ||||||||||||||| || |||||| ||||||| ||| |||||| | | ||||| |
|
|
| T |
22689019 |
gtggtaacaccagccttgaaaaatctggatggaaaataatataaacttgtatcagaaaaaggtctgcaataattttcccaagcaatggcattagtctttc |
22689118 |
T |
|
| Q |
313 |
tgagtctggacacataaccaggaacatcttgatcaaatccaaattgcctagcaactctatgtggtagatattgctctataaactcaaacccaactagctc |
412 |
Q |
| |
|
||| ||| || ||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
22689119 |
tgaatctagagacataaccaggaacatcttgatccattccaaactgcctagcaactctatgtggtagatattgctctatagactcaaatccaactagctc |
22689218 |
T |
|
| Q |
413 |
ataaactctcaagcatgtgacaaataagagcatttgtttatccaccaaatcgttcttaaatggtacccaaatttcatcattcgggtaaaacattccacac |
512 |
Q |
| |
|
| |||||||||||||| | |||||| | | ||||||||||||| ||||||| ||| | | || || ||||||||||| || || ||||||| ||||||| |
|
|
| T |
22689219 |
agaaactctcaagcatataacaaatgacaacatttgtttatccgccaaatctttcatcgacggcacacaaatttcatcctttggataaaacactccacac |
22689318 |
T |
|
| Q |
513 |
ttatgagcatagctaacataaggacgccaaataaaat |
549 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
22689319 |
ttatcagcatatctaacataaggacgccaaataaaat |
22689355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 197 - 554
Target Start/End: Complemental strand, 11544858 - 11544504
Alignment:
| Q |
197 |
ccaccacttttcataacaagtggtaacaccagctttaaaagacctagatggaaaatataaacttgtatcagataagggtctggtgtaatttttccatgca |
296 |
Q |
| |
|
||||||| || |||||| ||||||||||| || | |||| | |||||||||| ||||||||| |||||||||||||||| |||||||||||| ||| |
|
|
| T |
11544858 |
ccaccacgttgcataacgtgtggtaacaccggcatcaaaaaatctagatggaatgaataaacttgcatcagataagggtctgcagtaatttttccaagca |
11544759 |
T |
|
| Q |
297 |
atgacttgagtctcattgagtctggacacataaccaggaacatcttgatcaaatccaaattgcctagcaactctatgtggtagatattgctctataaact |
396 |
Q |
| |
|
||| || | ||||||||| ||| | |||| || | |||||||||||||| | |||||||||| |||||||||||||||| ||||||||||| ||| ||| |
|
|
| T |
11544758 |
atggtttcattctcattgaatctaggcacacaagctggaacatcttgatccattccaaattgcatagcaactctatgtggaagatattgctcaatagact |
11544659 |
T |
|
| Q |
397 |
caaacccaactagctcataaactctcaagcatgtgacaaataagagcatttgtttatccaccaaatcgttcttaaatggtacccaaatttcatcattcgg |
496 |
Q |
| |
|
|||| ||||||||||| |||||||||| | | |||||| |||| ||| ||||| ||||||| ||||||| |||||| || |||||||||| || |
|
|
| T |
11544658 |
caaaaccaactagctcggaaactctcaatgacataacaaatgagagattttttttat---ccaaatccttcttaagcggtaccaaagtttcatcatttgg |
11544562 |
T |
|
| Q |
497 |
gtaaaacattccacacttatgagcatagctaacataaggacgccaaataaaatcatcc |
554 |
Q |
| |
|
||||||||| || |||||| ||||| |||||| || ||||||| |||||||||| |
|
|
| T |
11544561 |
ataaaacatttcaaacttatcggcatattgaacatatgggcgccaaagaaaatcatcc |
11544504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 245 - 504
Target Start/End: Original strand, 22655694 - 22655950
Alignment:
| Q |
245 |
tggaaaatataaacttgtatcagataagggtctggtgtaatttttccatgcaatgacttgagtctcattgagtctggacacataaccaggaacatcttga |
344 |
Q |
| |
|
||||||||| || || ||||||||| ||||||| ||| |||||||| |||||| || ||||||||||| || | |||||||| |||||||||||| |
|
|
| T |
22655694 |
tggaaaatacaagtttttatcagatatgggtctgcagtagtttttccaagcaatgtatttagtctcattgaacctagctacataacccggaacatcttga |
22655793 |
T |
|
| Q |
345 |
tcaaatccaaattgcctagcaactctatgtggtagatattgctctataaactcaaacccaactagctcataaactctcaagcatgtgacaaataagagca |
444 |
Q |
| |
|
|||| |||||||||| ||| ||||||| |||| ||||||| |||||| ||||||| ||||| |||||| |||| ||||| ||| |||||| |||| | |
|
|
| T |
22655794 |
tcaattccaaattgcatagaaactctacgtggaagatatttttctatagactcaaatccaacaagctcagaaaccctcaaacatacaacaaatgagagaa |
22655893 |
T |
|
| Q |
445 |
tttgtttatccaccaaatcgttcttaaatggtacccaaatttcatcattcgggtaaaaca |
504 |
Q |
| |
|
||| | ||| ||||||| ||||||||||||||| ||||||||||||| || ||||||| |
|
|
| T |
22655894 |
tttttgtat---ccaaatccttcttaaatggtaccaaaatttcatcattaggataaaaca |
22655950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 240 - 346
Target Start/End: Original strand, 11563796 - 11563902
Alignment:
| Q |
240 |
ctagatggaaaatataaacttgtatcagataagggtctggtgtaatttttccatgcaatgacttgagtctcattgagtctggacacataaccaggaacat |
339 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||||| |||||||||||| |||||| || | ||||||||| ||| | |||| || | ||||||| |
|
|
| T |
11563796 |
ctagatggaatgaataaacttgcatcagataagggtctgcagtaatttttccaagcaatggtttcattctcattgaatctaggcacacaagctggaacat |
11563895 |
T |
|
| Q |
340 |
cttgatc |
346 |
Q |
| |
|
||||||| |
|
|
| T |
11563896 |
cttgatc |
11563902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 71
Target Start/End: Original strand, 22688615 - 22688661
Alignment:
| Q |
25 |
tattatcacccttgctagtttttgaaccgtcatcactagattttcca |
71 |
Q |
| |
|
||||| |||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
22688615 |
tattaccacccttgctagattttgaaccatcatcactagattttcca |
22688661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 22688708 - 22688761
Alignment:
| Q |
16 |
catcaacaatattatcacccttgctagtttttgaaccgtcatcactagattttc |
69 |
Q |
| |
|
|||||| |||||||||||||||| ||||| || |||| |||||||||||||||| |
|
|
| T |
22688708 |
catcaataatattatcacccttgttagttcttaaaccatcatcactagattttc |
22688761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 120; Significance: 4e-61; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 262 - 553
Target Start/End: Complemental strand, 1717943 - 1717652
Alignment:
| Q |
262 |
tatcagataagggtctggtgtaatttttccatgcaatgacttgagtctcattgagtctggacacataaccaggaacatcttgatcaaatccaaattgcct |
361 |
Q |
| |
|
||||||||| ||| ||| ||| | |||||| |||||| || || |||||||| ||| | ||||| || |||||||||||||| | |||||||||| | |
|
|
| T |
1717943 |
tatcagatatgggcctgcagtagtgtttccaagcaatggatttagcctcattgaatctaggcacatcacttggaacatcttgatccattccaaattgcat |
1717844 |
T |
|
| Q |
362 |
agcaactctatgtggtagatattgctctataaactcaaacccaactagctcataaactctcaagcatgtgacaaataagagcatttgtttatccaccaaa |
461 |
Q |
| |
|
||||||||||||||| ||||| ||||||||| | ||||| ||||| || ||| | |||||||||||| | |||||| | |||||||||| |||||||||| |
|
|
| T |
1717843 |
agcaactctatgtggcagatactgctctatagagtcaaatccaacaagttcagatactctcaagcatataacaaatgacagcatttgttcatccaccaaa |
1717744 |
T |
|
| Q |
462 |
tcgttcttaaatggtacccaaatttcatcattcgggtaaaacattccacacttatgagcatagctaacataaggacgccaaataaaatcatc |
553 |
Q |
| |
|
|| ||||||||||||||| |||||||||||| || ||||||||||||| ||||| |||||| |||||||| |||||||||||||||||||| |
|
|
| T |
1717743 |
tctttcttaaatggtaccaaaatttcatcatatggataaaacattccacgcttatcagcatatctaacatatggacgccaaataaaatcatc |
1717652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 322 - 552
Target Start/End: Complemental strand, 38483634 - 38483409
Alignment:
| Q |
322 |
acacataaccaggaacatcttgatcaaatccaaattgcctagcaactctatgtggtagatattgctctataaactcaaacccaactagctcataaactct |
421 |
Q |
| |
|
||||||||| | |||||||| ||| | ||||||||| ||||||||||||| | ||| ||||||||| |||||| | ||| |||||| ||||||| |
|
|
| T |
38483634 |
acacataacttgtaacatcttaatccataccaaattgcatagcaactctatgac--aaatactgctctatagtctcaaatctaacaagctcaaaaactct |
38483537 |
T |
|
| Q |
422 |
caagcatgtgacaaataagagcatttgtttatccaccaaatcgttcttaaatggtacccaaatttcatcattcgggtaaaacattccacacttatgagca |
521 |
Q |
| |
|
||||||| | |||||| ||||||||||||||| |||||| |||||||| |||||| ||| | ||||||| | ||||||| |||||||||| | || |
|
|
| T |
38483536 |
caagcatataacaaatgagagcatttgtttat---ccaaatatttcttaaacggtaccaaaagtgcatcattttgataaaacaaaccacacttatcatca |
38483440 |
T |
|
| Q |
522 |
tagctaacataaggacgccaaataaaatcat |
552 |
Q |
| |
|
|| |||| ||| |||||| ||| |||||||| |
|
|
| T |
38483439 |
tatctaaaatatggacgctaaagaaaatcat |
38483409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 94; Significance: 1e-45; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 285 - 552
Target Start/End: Original strand, 26354345 - 26354609
Alignment:
| Q |
285 |
tttttccatgcaatgacttgagtctcattgagtctggacacataaccaggaacatcttgatcaaatccaaattgcctagcaactctatgtggtagatatt |
384 |
Q |
| |
|
|||||||| ||||||| || ||||||||| | ||| | |||||||| |||||||||||||| | |||||||||| |||||||||||||||| | ||| | |
|
|
| T |
26354345 |
tttttccaagcaatgaatttagtctcattaaatctaggcacataacttggaacatcttgatccattccaaattgcatagcaactctatgtggcaaatact |
26354444 |
T |
|
| Q |
385 |
gctctataaactcaaacccaactagctcataaactctcaagcatgtgacaaataagagcatttgtttatccaccaaatcgttcttaaatggtacccaaat |
484 |
Q |
| |
|
|||||||| | ||||| ||||| |||||| ||||||||| |||| | |||||| ||||||||||||||| ||||||| ||||||||||||||| |||| |
|
|
| T |
26354445 |
gctctatagagtcaaatccaacaagctcagaaactctcaggcatataacaaatgagagcatttgtttat---ccaaatctttcttaaatggtaccgaaat |
26354541 |
T |
|
| Q |
485 |
ttcatcattcgggtaaaacattccacacttatgagcatagctaacataaggacgccaaataaaatcat |
552 |
Q |
| |
|
| ||||||| || ||||| | ||||| | || ||||| |||| ||| |||||||||| |||||||| |
|
|
| T |
26354542 |
tgcatcatttggataaaatacaccacattcatctgcatatctaaaatatggacgccaaagaaaatcat |
26354609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 285 - 555
Target Start/End: Complemental strand, 9815734 - 9815467
Alignment:
| Q |
285 |
tttttccatgcaatgacttgagtctcattgagtctggacacataaccaggaacatcttgatcaaatccaaattgcctagcaactctatgtggtagatatt |
384 |
Q |
| |
|
|||||||| || |||| || ||||||||||| ||| | ||||||| |||||||||||||| | | |||||||| |||||||||||||||| | ||| | |
|
|
| T |
9815734 |
tttttccaagccatgagtttagtctcattgaatctaggcacataagttggaacatcttgatccatttcaaattgcatagcaactctatgtggcaaatact |
9815635 |
T |
|
| Q |
385 |
gctctataaactcaaacccaactagctcataaactctcaagcatgtgacaaataagagcatttgtttatccaccaaatcgttcttaaatggtacccaaat |
484 |
Q |
| |
|
|||||||| | || || ||||| ||||| |||||||||||||| | |||||| |||||||| | |||| ||||||| ||||||||||||||| ||| |
|
|
| T |
9815634 |
gctctatagagtcgaatccaacaagctcggaaactctcaagcatataacaaatgagagcattagcttat---ccaaatctttcttaaatggtaccaaaag |
9815538 |
T |
|
| Q |
485 |
ttcatcattcgggtaaaacattccacacttatgagcatagctaacataaggacgccaaataaaatcatcca |
555 |
Q |
| |
|
||||||| || ||||||| || || |||| |||||| |||| ||| |||||||||| ||||||||||| |
|
|
| T |
9815537 |
cgcatcatttggataaaacacaccgcagttatcagcatatctaaaatatggacgccaaagaaaatcatcca |
9815467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 323 - 439
Target Start/End: Original strand, 38435045 - 38435161
Alignment:
| Q |
323 |
cacataaccaggaacatcttgatcaaatccaaattgcctagcaactctatgtggtagatattgctctataaactcaaacccaactagctcataaactctc |
422 |
Q |
| |
|
|||||||| |||||||||||||||| || ||||| | ||||| ||||||||||||||||||| || ||| | ||||| |||| ||||| |||||||| |
|
|
| T |
38435045 |
cacataacttggaacatcttgatcaattctaaattacatagcatctctatgtggtagatattgttcaatagagtcaaatccaattagctaggaaactctc |
38435144 |
T |
|
| Q |
423 |
aagcatgtgacaaataa |
439 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
38435145 |
aagcatgtaacaaataa |
38435161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 199 - 424
Target Start/End: Original strand, 39191308 - 39191533
Alignment:
| Q |
199 |
accacttttcataacaagtggtaacaccagctttaaaagacctagatggaaaatataaacttgtatcagataagggtctggtgtaatttttccatgcaat |
298 |
Q |
| |
|
||||| || |||||| ||||||||||| || | |||| | |||||||||| ||||||||||| ||||||||||||||| |||||||||||| ||||| |
|
|
| T |
39191308 |
accacgttgcataacgtgtggtaacaccggcatcaaaaaatctagatggaatgtataaacttgtttcagataagggtctgcagtaatttttccaagcaat |
39191407 |
T |
|
| Q |
299 |
gacttgagtctcattgagtctggacacataaccaggaacatcttgatcaaatccaaattgcctagcaactctatgtggtagatattgctctataaactca |
398 |
Q |
| |
|
| || ||||||||||| ||| | |||| || | |||||||||||||| | |||||||||| |||||||||||||||| ||||||||||| ||| ||||| |
|
|
| T |
39191408 |
ggtttcagtctcattgaatctaggcacacaatctggaacatcttgatccattccaaattgcatagcaactctatgtggaagatattgctcaatagactca |
39191507 |
T |
|
| Q |
399 |
aacccaactagctcataaactctcaa |
424 |
Q |
| |
|
|| ||||||||||| |||||||||| |
|
|
| T |
39191508 |
aaaccaactagctccgaaactctcaa |
39191533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 4e-18; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 338 - 552
Target Start/End: Original strand, 12495462 - 12495677
Alignment:
| Q |
338 |
atcttgatcaaatccaaattgcctagcaactctatgtggtagatattgctctataaactcaaacccaactagctcataaactctcaagcatgtgacaaat |
437 |
Q |
| |
|
|||||| |||| ||||||||| ||| ||||||||| | ||||||||||||||| || ||| ||||| |||||| || ||||||||||| | |||| |
|
|
| T |
12495462 |
atcttggtcaattccaaattgtatagacactctatgtagaagatattgctctatacgcttaaatccaacaagctcaaaatctctcaagcatatagaaaat |
12495561 |
T |
|
| Q |
438 |
aagagcatttgtttatccaccaaatcgttcttaaatggtacccaaatttcatcattcgggt----aaaacattccacacttatgagcatagctaacataa |
533 |
Q |
| |
|
| || |||| ||||| ||||||| ||||||||||||||||||||||||| ||| || | |||| ||||||||||| | || ||| ||| |||| |
|
|
| T |
12495562 |
caaagtatttttttat---ccaaatccttcttaaatggtacccaaatttcattatttggataaaaaaaaaattccacacttctcaggatatctagcatat |
12495658 |
T |
|
| Q |
534 |
ggacgccaaataaaatcat |
552 |
Q |
| |
|
|||||||||| |||||||| |
|
|
| T |
12495659 |
ggacgccaaagaaaatcat |
12495677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 338 - 552
Target Start/End: Original strand, 12579559 - 12579773
Alignment:
| Q |
338 |
atcttgatcaaatccaaattgcctagcaactctatgtggtagatattgctctataaactcaaacccaactagctcataaactctcaagcatgtgacaaat |
437 |
Q |
| |
|
|||||| |||| ||||||||| ||| ||||||||| | ||||||||||||||| || ||| ||||| |||||| || ||||||||||| | |||| |
|
|
| T |
12579559 |
atcttggtcaattccaaattgtatagacactctatgtcgaagatattgctctataggcttaaatccaacaagctcaaaatctctcaagcatatagaaaat |
12579658 |
T |
|
| Q |
438 |
aagagcatttgttt-atccaccaaatcgttcttaaatggtacccaaatttcatcattcgggtaaa--acattccacacttatgagcatagctaacataag |
534 |
Q |
| |
|
| || |||| ||| ||||| |||| ||||||||||||||||||||||||| ||| || |||| | ||||||||||| | || ||| ||| |||| | |
|
|
| T |
12579659 |
caaagtattttttttatcca---aatccttcttaaatggtacccaaatttcattatttggataaaagaaattccacacttcttaggatatctagcatatg |
12579755 |
T |
|
| Q |
535 |
gacgccaaataaaatcat |
552 |
Q |
| |
|
|||| |||| |||||||| |
|
|
| T |
12579756 |
gacgtcaaagaaaatcat |
12579773 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 457 - 552
Target Start/End: Original strand, 12519382 - 12519478
Alignment:
| Q |
457 |
ccaaatcgttcttaaatggtacccaaatttcatcattcgggt--aaaacattccacacttatgagcatagctaacataaggacgccaaataaaatcat |
552 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| ||| || | |||| ||||||||||| | || ||| ||| |||| ||||| |||| |||||||| |
|
|
| T |
12519382 |
ccaaatccttcttaaatggtacccaaatttcattatttggataaaaaaaattccacacttctcaggatatctagcatatggacg-caaagaaaatcat |
12519478 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 424
Target Start/End: Complemental strand, 12581911 - 12581822
Alignment:
| Q |
335 |
aacatcttgatcaaatccaaattgcctagcaactctatgtggtagatattgctctataaactcaaacccaactagctcataaactctcaa |
424 |
Q |
| |
|
|||||||||||||| |||||||||| || |||| ||||| | ||| || |||||||| ||||||| |||| |||| | |||||||||| |
|
|
| T |
12581911 |
aacatcttgatcaattccaaattgcataaaaactgtatgtcgaagacatagctctatatactcaaatccaataagcttagaaactctcaa |
12581822 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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