View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1957_low_7 (Length: 516)
Name: NF1957_low_7
Description: NF1957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1957_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 458; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 1 - 498
Target Start/End: Complemental strand, 48320124 - 48319628
Alignment:
| Q |
1 |
acaacaacatggaaatggtagtacaaatgaaacattttctgttccaatggttcaagatcaatatgatcaaaacagtaataatttttcatttggaagaaat |
100 |
Q |
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| T |
48320124 |
acaacaacatggaaatggtagtacaaatgaaacattttctgttccaatggttcaagatcaatatgatcaaaacagtattaatttttcatttggaagaaat |
48320025 |
T |
|
| Q |
101 |
agccttgaagtgggtgatagttcatcaagaatgtatgagaatcaacaacagagtatacctgaaattcagattccggttttgttgaaccaaaccgaactgc |
200 |
Q |
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| T |
48320024 |
agccttgaagtgggtgatagttcatcaagaatatatgagaatcaacaacaaagtatacctgaaattcagattcccattttgttgaaccaaaccgaactgc |
48319925 |
T |
|
| Q |
201 |
gagcacttaatcaatggccacccacagtaaccccgtatttttgcagttgttgtcaagttctcagagaaatcatacacagtgatggttagtttttaattaa |
300 |
Q |
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| T |
48319924 |
gagcacttaatcaatggccacccacagtaaccccgtatttttgcagttgttgtcaagttctcagagaaatcatacacactgatggttagtttttaattaa |
48319825 |
T |
|
| Q |
301 |
tcatatatatggccaaaattaatgaatatgaaattaatgcccatgtttctgatatatatctttatttgaattatttataaggtatgcaatttgaaaagct |
400 |
Q |
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| T |
48319824 |
tcatatatatggccaaaattaatgaatatgaaattaatgcccatgtttctgatatatatctttatttgaattatttat-aggtatgcaatttgaaaagct |
48319726 |
T |
|
| Q |
401 |
tgagattcatggaaggttggcgttgattacacatgcagttcaccatcagatacctgttaatggggccccatcagtttatcaaatgatcgagtatgttc |
498 |
Q |
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| T |
48319725 |
tgagattcatggaaggttggcgttgattacacatgcaattcaccatcagatacctgttaatggggccccatcagtttatcaaatgattgagtatgttc |
48319628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 5 - 152
Target Start/End: Original strand, 26325883 - 26326027
Alignment:
| Q |
5 |
caacatggaaatggtagtacaaatgaaacattttctgttccaatggttcaagatcaatatgatcaaaacagtaataatttttcatttggaagaaatagcc |
104 |
Q |
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||||||||| |||||| ||| ||||||||||||||| |||||||||||||| ||||| || ||| | ||||||| |||||||||||| |||| | |
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| T |
26325883 |
caacatggacatggtactactaatgaaacattttctcttccaatggttcaaaatcaacttggtcagccaaataataatgtttcatttggaatgaataact |
26325982 |
T |
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| Q |
105 |
ttgaagtgggtgatagttcatcaagaatgtatgagaatcaacaacaga |
152 |
Q |
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| T |
26325983 |
ttgaagcggg---tagttcatcacgaacgaatgagaatcaacaacaga |
26326027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 387 - 498
Target Start/End: Original strand, 26326223 - 26326334
Alignment:
| Q |
387 |
caatttgaaaagcttgagattcatggaaggttggcgttgattacacatgcagttcaccatcagatacctgttaatggggccccatcagtttatcaaatga |
486 |
Q |
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|||| |||||| ||||||||||||||||| |||| |||||||||||||||| |||||||| | |||||||||||| | |||| || || ||| ||||| |
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| T |
26326223 |
caatatgaaaatcttgagattcatggaagcttggagttgattacacatgcaattcaccatgtaacacctgttaatggaggcccaacatttgatcgaatga |
26326322 |
T |
|
| Q |
487 |
tcgagtatgttc |
498 |
Q |
| |
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| T |
26326323 |
ttgagtacgttc |
26326334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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