View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1957_low_9 (Length: 476)
Name: NF1957_low_9
Description: NF1957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1957_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 15 - 456
Target Start/End: Original strand, 28118461 - 28118902
Alignment:
| Q |
15 |
aatattacaatatgtttacatatgttgatacccataattagcaatagcataggctaccaatcattcaaccatttaatgcttgatccacacaattggttct |
114 |
Q |
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| T |
28118461 |
aatattacaatatgtttacatatgttgatacccataattagcaatagcataggctaccaatcattcaaccatttaatgcttgatccacacaattggttct |
28118560 |
T |
|
| Q |
115 |
tccccatgccaccattatataaaccttatcactttccatccaagtactcatcactacacttctctctccctctcattacatcttatactctaggcactat |
214 |
Q |
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| T |
28118561 |
tccccatgccaccattatataaaccttatcactttccatccaagtactcatcactacacttctctctccctctcattacatcctatactctaggcactat |
28118660 |
T |
|
| Q |
215 |
gaagtcaagatttttgaaaggatgtgttaacaaatgcaagaaaatgggaagcatagtaaaaacttgtgctacttgtgaagattgttgtgaaagaggttta |
314 |
Q |
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| T |
28118661 |
gaagtcaagatttttgaaaggatgtgttaacaaatgcaagaaaatgggaagtatagtaaaaacttgtgctacttgtgaagattgttgtgaaagaggttta |
28118760 |
T |
|
| Q |
315 |
tggtcttctctgcatgaaagttgctccataccaagtgatgtaccaaaaggtcacatggttgtatatgtaggagagaatcacaaaagatatgtgatcaaaa |
414 |
Q |
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| T |
28118761 |
tggtcttctctgcatgaaagttgctccataccaagtgatgtaccaaaaggtcacatggttgtatatgtaggagagaatcacaaaagatatgtgatcaaaa |
28118860 |
T |
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| Q |
415 |
ttgcattgcttcatcatccactcttcaaagccttgttggatc |
456 |
Q |
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| T |
28118861 |
ttgcattgcttcatcatccactcttcaaagccttgttggatc |
28118902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 345 - 454
Target Start/End: Complemental strand, 41011078 - 41010969
Alignment:
| Q |
345 |
ccaagtgatgtaccaaaaggtcacatggttgtatatgtaggagagaatcacaaaagatatgtgatcaaaattgcattgcttcatcatccactcttcaaag |
444 |
Q |
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|||| |||||| ||||| |||||| ||||||| |||||||| ||||| | || |||| ||| ||||| |||| ||| || ||||||||||| ||||| | |
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| T |
41011078 |
ccaaatgatgttccaaagggtcacttggttgtgtatgtaggtgagaactataagagatttgtcatcaagattggattactccatcatccacttttcaagg |
41010979 |
T |
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| Q |
445 |
ccttgttgga |
454 |
Q |
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| T |
41010978 |
ccttgttgga |
41010969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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