View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19580_high_1 (Length: 705)
Name: NF19580_high_1
Description: NF19580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19580_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 625; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 625; E-Value: 0
Query Start/End: Original strand, 13 - 692
Target Start/End: Complemental strand, 29287644 - 29286967
Alignment:
| Q |
13 |
aatattcccgtatataaataaaacaagtgtattactaatactattgagtcttctatgtttcatgtgttttttcttcttttgcaagcaatgcttaattacg |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29287644 |
aatattcccgtatataaataaaacaagtgtattactaatactattgagtcttctatgtttcatgtgttttttcttcttttgcaagcaatgcttaattacg |
29287545 |
T |
|
| Q |
113 |
aaacataatttttgttatatggttttgtttttggagtgtaacatcaatacactctttagcatatattttccaatccctcaaaattttgtgtgaatcatat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
29287544 |
aaacataatttttgttatatggttttgtttttggagggtaacatcaatacactctttagcatatattttccaatccctcaaaatt--gtgtgaatcatat |
29287447 |
T |
|
| Q |
213 |
ttatattttgaagagtaaatcattgtttcagtcttcaaaattgtaataatcgatttagtgaacatccattgtttttatttaaaagagtttagattaggtg |
312 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
29287446 |
ttatattttgaaaagtaaatcattgtttcagtcttcaaaattgtaataattgatttagtgaacatccattgtttttatttaaaagaatttagattaggtg |
29287347 |
T |
|
| Q |
313 |
tacggtggtgtggtgtgctgacatagtttatatgggtggtaaaatcgggcacataacagcttgcaccagcaaactgccagtctgtcacaccagcaccaga |
412 |
Q |
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||||||||||||| ||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29287346 |
tacggtggtgtggcgtgctaacatagtttatatgggtggcaaaatcaggcacataacagcttgcaccagcaaactgccagtctgtcacaccagcaccaga |
29287247 |
T |
|
| Q |
413 |
aaacagacagaaaccgcataaaagccagaaagcatgcacaactgcactgtcagcctgataactgcaatgaaccttccaccctcttctctcctcaatcact |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29287246 |
aaacagacagaaaccgcataaaagccagaaagcatgcacaactgcactgtcagcctgataactgcaatgaaccttccaccctcttctctcctcaatcact |
29287147 |
T |
|
| Q |
513 |
acaataggcagtcccttggattccaacttcattcataaaacaaacatgtcgggatttttaatctttgtaaactccatcttcattataacacctccacctc |
612 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
29287146 |
ataataggcagtcccttggattccaacttcattcataaaacaaacatgtcgggatttttaatctttgtaaactccatcttcatgataacacctccacctc |
29287047 |
T |
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| Q |
613 |
ctccacgatctcctcatccaccctcgtgtcgttcttaaaaataattcgatttcttgcttgccaaatagcccacatggttg |
692 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29287046 |
ctccacgatctcctcatccaccctcgtgtcattcttaaaaataattcgatttcttgcttgccaaatagcccacatggttg |
29286967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 518 - 564
Target Start/End: Original strand, 10727932 - 10727978
Alignment:
| Q |
518 |
aggcagtcccttggattccaacttcattcataaaacaaacatgtcgg |
564 |
Q |
| |
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||||| || ||||| ||||||| |||||||||||||||||||||||| |
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| T |
10727932 |
aggcaatctcttgggttccaacatcattcataaaacaaacatgtcgg |
10727978 |
T |
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