View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19580_high_10 (Length: 406)
Name: NF19580_high_10
Description: NF19580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19580_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 383; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Complemental strand, 39839599 - 39839213
Alignment:
| Q |
1 |
cagacacataaaaggaacctaccgagctacgaacaaccatggaaggtaaagcatgatgattgctaagatcaagtgagagttccattccagaatttccaca |
100 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39839599 |
cagacacataaaaggaacttaccgagctacgaacaaccatggaaggtaaagcatgatgattgctaagatcaagtgagagttccattccagaatttccaca |
39839500 |
T |
|
| Q |
101 |
tccaacaacaagaactttctttccttcaaaatttttccctgacttgtaatcacaagcataaacaacttcacctttgaattcagaaagtccttcaatttca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39839499 |
tccaacaacaagaactttctttccttcaaaatttttccctgacttgtaatcacaagcataaacaacttcacctttgaattcagaaagtccttcaatttca |
39839400 |
T |
|
| Q |
201 |
ggagtaacacactcagcattttcgccggtagcaacaacaagccacctacaaatatactcaacttcatttgtcttgaccctccacaatccactggtttcat |
300 |
Q |
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| T |
39839399 |
ggagtaacacactcagcattttcgccggtagcaacaacaagccacctacaaatatactcaacttcatttgtcttgaccctccacaatccactggtttcat |
39839300 |
T |
|
| Q |
301 |
catacttagcagattgaacacactcgttgaattgcgggttgatttcaaatttgttagcatagttttcaaggtagcttatgaattgtt |
387 |
Q |
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| T |
39839299 |
catacttagcagattgaacacactcgttgaattgcgggttgatttcaaatttgttagcatagttttcaaggtagcttatgaattgtt |
39839213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Original strand, 39733359 - 39733741
Alignment:
| Q |
1 |
cagacacataaaaggaacctaccgagctacgaacaaccatggaaggtaaagcatgatgattgctaagatcaagtgagagttccattccagaatttccaca |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39733359 |
cagacacataaaaggaacttaccgagctacgaacaaccatggaaggtaaagcatgatgattgctaagatcaagtgagagttccattccagaatttccaca |
39733458 |
T |
|
| Q |
101 |
tccaacaacaagaactttctttccttcaaaatttttccctgacttgtaatcacaagcataaacaacttcacctttgaattcagaaagtccttcaatttca |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39733459 |
tccaacaacaagaactttctttccttcaaaatttttccctgacttgtaatcacaagcataaacaacttcacctttgaattcagaaagtccttcaatttca |
39733558 |
T |
|
| Q |
201 |
ggagtaacacactcagcattttcgccggtagcaacaacaagccacctacaaatatactcaacttcatttgtcttgaccctccacaatccactggtttcat |
300 |
Q |
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| T |
39733559 |
ggagtaacacactcagcattttcgccggtagcaacaacaagccacctacaaatatactcaacttcatttgtcttgaccctccacaatccactggtttcat |
39733658 |
T |
|
| Q |
301 |
catacttagcagattgaacacactcgttgaattgcgggttgatttcaaatttgttagcatagttttcaaggtagcttatgaat |
383 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39733659 |
catacttagcagattgaacacactcgttgaattgcgggttgatttcaaatttgttagcatagttttcaaggtagcttatgaat |
39733741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 327 - 387
Target Start/End: Original strand, 31290616 - 31290676
Alignment:
| Q |
327 |
ttgaattgcgggttgatttcaaatttgttagcatagttttcaaggtagcttatgaattgtt |
387 |
Q |
| |
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|||||||| |||| ||||||||||||||| | |||||||||||||||| ||||||| |||| |
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| T |
31290616 |
ttgaattgtgggtcgatttcaaatttgttcggatagttttcaaggtagtttatgaactgtt |
31290676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 332 - 387
Target Start/End: Complemental strand, 31290181 - 31290126
Alignment:
| Q |
332 |
ttgcgggttgatttcaaatttgttagcatagttttcaaggtagcttatgaattgtt |
387 |
Q |
| |
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||||||| ||||||||||||||||||||||||| |||| ||| ||||||| |||| |
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| T |
31290181 |
ttgcggggagatttcaaatttgttagcatagtttacaagatagtttatgaactgtt |
31290126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 261
Target Start/End: Complemental strand, 31290504 - 31290472
Alignment:
| Q |
229 |
tagcaacaacaagccacctacaaatatactcaa |
261 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |
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| T |
31290504 |
tagcaacaacaagccacctacaaatattctcaa |
31290472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 94; Significance: 9e-46; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 20 - 349
Target Start/End: Original strand, 29857435 - 29857779
Alignment:
| Q |
20 |
taccgagctacgaacaaccatggaaggtaaagcatgatgattgctaagatcaagtgagagttccattccagaatttccacatccaacaacaagaactttc |
119 |
Q |
| |
|
|||||||||||||| ||| || |||||| | |||| |||||||| ||||||||| || ||||||||||||||||| ||||| |||||||| | ||||||| |
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| T |
29857435 |
taccgagctacgaagaacaatagaaggtgatgcattatgattgcaaagatcaagagaaagttccattccagaattaccacaaccaacaaccaaaactttc |
29857534 |
T |
|
| Q |
120 |
tttccttcaaaatttttccctgacttgtaatcacaagcataaacaacttcacctttgaattcagaa---agtccttcaatttcaggagtaacacactcag |
216 |
Q |
| |
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|| ||| |||| ||| ||||| || ||||||||||||| || || |||||| ||||||||| | | |||||||| | ||| ||||||||| | |
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| T |
29857535 |
ttccctctaaaactttcacctgatttataatcacaagcatgaataatttcacccttgaattcaccacctaacccttcaatataaggcacaacacactctg |
29857634 |
T |
|
| Q |
217 |
cattttcgccggtagcaacaacaagccacctacaaatatactcaacttcattt------------gtcttgaccctccacaatccactggtttcatcata |
304 |
Q |
| |
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|||| || || |||||||| |||||| |||||||||||||||||||||||||| |||| || |||||||| ||| | || |||||||| |
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| T |
29857635 |
cattctcaccagtagcaaccacaagcgacctacaaatatactcaacttcatttccattggaaacagtctcaactctccacaacccattagtctcatcata |
29857734 |
T |
|
| Q |
305 |
cttagcagattgaacacactcgttgaattgcgggttgatttcaaa |
349 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
29857735 |
tttagcagattgaacacactcgttgaatcgcgggttgatttcaaa |
29857779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 219 - 266
Target Start/End: Complemental strand, 17408021 - 17407974
Alignment:
| Q |
219 |
ttttcgccggtagcaacaacaagccacctacaaatatactcaacttca |
266 |
Q |
| |
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||||| ||||||||||| |||||||||||||||||||||||||||||| |
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| T |
17408021 |
ttttcaccggtagcaaccacaagccacctacaaatatactcaacttca |
17407974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 65 - 124
Target Start/End: Complemental strand, 17408175 - 17408116
Alignment:
| Q |
65 |
aagatcaagtgagagttccattccagaatttccacatccaacaacaagaactttctttcc |
124 |
Q |
| |
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||||||||| || | |||||| ||||||||||||||||||||||||||||| || ||||| |
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|
| T |
17408175 |
aagatcaagagaaacttccatgccagaatttccacatccaacaacaagaacattttttcc |
17408116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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