View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19580_high_18 (Length: 362)
Name: NF19580_high_18
Description: NF19580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19580_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 306; Significance: 1e-172; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 9 - 345
Target Start/End: Original strand, 3701402 - 3701738
Alignment:
| Q |
9 |
gagatgaacgaagtgagattcgacaaagaattgaagagcttaaagatgatgcagcttgtgcattagcagaagatgggtcctctacaagagctctttttga |
108 |
Q |
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| T |
3701402 |
gagaagaacgaagtgagattcgacaaagaattgaagagcttaaagatgatgcagcttgtgcattagcagaagatgggtcctctacaagagctctttttga |
3701501 |
T |
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| Q |
109 |
attcggtactcgagtggaaaacttttcgttgtaaatggaaatttcaattatcgtcgttttattgggtaagctatgcaaagaagaaaagaatagagggaat |
208 |
Q |
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| T |
3701502 |
attcggtactcgagtggaaaacttttcgttgtaaatggaaatttcaattatcgtcgttttattgggtaagctatgcaaagaagaaaagaatagagggaat |
3701601 |
T |
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| Q |
209 |
atatatttgtcaaatagaaatcgtgtgaaagttttagtgtctataatgtttgcataattgcattgaatgatttaatacttgatcgattaaactcga-tta |
307 |
Q |
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| T |
3701602 |
atgtatttgtcaaatagaaatc-tgtgaaagttttggtgtctataatgtttgcataattgcattgaatgatttaatacttgatcgattaaactcgagtta |
3701700 |
T |
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| Q |
308 |
gttcgtcacgcaactgctacttgctatatctattttct |
345 |
Q |
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| T |
3701701 |
gttggtcacgcaactgctacttgctatatctattttct |
3701738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 9 - 343
Target Start/End: Original strand, 3708169 - 3708504
Alignment:
| Q |
9 |
gagatgaacgaagtgagattcgacaaagaattgaagagcttaaagatgatgcagcttgtgcattagcagaagatgggtcctctacaagagctctttttga |
108 |
Q |
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| T |
3708169 |
gagaagaacggagtgagattcgacaaagaattgaagagcttaaagatgatgcagcttgtgcattagcagaagatgggtcctctacaagagcactttgtga |
3708268 |
T |
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| Q |
109 |
attcggtactcgagtggaaaacttttcgttgtaaatggaaatttcaattatcgtcgttttattgggtaagctatgcaaagaagaaaagaatagagggaat |
208 |
Q |
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| T |
3708269 |
attcggtactcgagtagcaaacttttcgttataaatggaaatttcaattatcaacgttttatagggaaagctgtgcaaagaagaaaagaatcgagggaat |
3708368 |
T |
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| Q |
209 |
atatatttgtcaaatagaaatcgtgtgaaagttttagtgtctataatgtttgcataattgcattgaatgatttaatacttgatcgattaaactcga-tta |
307 |
Q |
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|| |||||||| |||||||||| ||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| || |
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| T |
3708369 |
atgtatttgtcgaatagaaatcatgtgagagttttggtgtctataatgtttgcataattgcattgaataatttaatacttgatctattaaactcgagttt |
3708468 |
T |
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| Q |
308 |
gttcgtcacgcaactgctacttgctatatctatttt |
343 |
Q |
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| T |
3708469 |
gttcgccacacaactgctacttgctatatctatttt |
3708504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 9 - 194
Target Start/End: Complemental strand, 3770026 - 3769842
Alignment:
| Q |
9 |
gagatgaacgaagtgagattcgacaaagaattgaagagcttaaagatgatgcagcttgtgcattagcagaagatgggtcctctacaagagctctttttga |
108 |
Q |
| |
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|||| ||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||| ||||||||| |||||||| |
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| T |
3770026 |
gagaagaacggagtgagattcgacaaagaattgaagagctaaaagatgaagcagcttgtgcattagcaggagatgggtcctttacaagagcactttttga |
3769927 |
T |
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| Q |
109 |
attcggtactcgagtggaaaacttttcgttgtaaatggaaatttcaattatcgtcgttttattgggtaagctatgcaaagaagaaa |
194 |
Q |
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| T |
3769926 |
atttggtactcgtgtggaaaacttttccttataattggaaatttcatttatttacgtttta-cgggaaagctatgcaaagaagaaa |
3769842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 15 - 261
Target Start/End: Original strand, 3719684 - 3719929
Alignment:
| Q |
15 |
aacgaagtgagattcgacaaagaattgaagagcttaaagatgatgcagcttgtgcattagcagaagatgggtcctctacaagagctctttttgaattcgg |
114 |
Q |
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|||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||| |||||| || |
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| T |
3719684 |
aacggagtgagattcgacaaagaatggaagagcttaaaaatgatgcagcttgtgcattagcagaagatgggtcctctacaagggcattttctgaatttgg |
3719783 |
T |
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| Q |
115 |
tactcgagtggaaaacttttcgttgtaaatggaaatttcaattatcgtc-gttttattgggtaagctatgcaaagaagaaaagaatagagggaatatata |
213 |
Q |
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|||| | | | |||||| | ||| |||| |||||||| | |||| | | ||||| || |||||||||| ||||||| |||||| |||||| | || |
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| T |
3719784 |
aactcaaataggaaacttgttgttataaaaggaaatttaatttattgacatttttacaggaaaagctatgcagtgaagaaatgaatagtgggaatgtgta |
3719883 |
T |
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| Q |
214 |
tttgtcaaatagaaatcgtgtgaaagttttagtgtctataatgtttgc |
261 |
Q |
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| T |
3719884 |
attgtcgaatagaaat--tgtgagagttttagtgtctataatgtttgc |
3719929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 14 - 95
Target Start/End: Complemental strand, 3777691 - 3777610
Alignment:
| Q |
14 |
gaacgaagtgagattcgacaaagaattgaagagcttaaagatgatgcagcttgtgcattagcagaagatgggtcctctacaa |
95 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||| ||| ||| |||||||||||||||||||||||||||||| |
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| T |
3777691 |
gaacgaagtgagattcgacaaagaattgaagatcttaaagatgttgctgctggtgcattagcagaagatgggtcctctacaa |
3777610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 96
Target Start/End: Complemental strand, 33004916 - 33004851
Alignment:
| Q |
31 |
acaaagaattgaagagcttaaagatgatgcagcttgtgcattagcagaagatgggtcctctacaag |
96 |
Q |
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| T |
33004916 |
acaaagaattgaagagcttaaatatgcttctacttgtgcattagcagaagatgggtcttccacaag |
33004851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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