View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19580_high_22 (Length: 297)

Name: NF19580_high_22
Description: NF19580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19580_high_22
NF19580_high_22
[»] chr8 (3 HSPs)
chr8 (10-294)||(8988584-8988868)
chr8 (19-233)||(8992994-8993208)
chr8 (36-165)||(16721469-16721598)
[»] chr1 (1 HSPs)
chr1 (36-173)||(14459322-14459459)
[»] chr7 (1 HSPs)
chr7 (201-294)||(9633495-9633588)
[»] chr4 (1 HSPs)
chr4 (201-294)||(13603658-13603751)
[»] chr3 (1 HSPs)
chr3 (44-100)||(13101374-13101430)
[»] chr2 (2 HSPs)
chr2 (202-260)||(18370940-18370998)
chr2 (44-100)||(22541870-22541925)
[»] chr6 (1 HSPs)
chr6 (46-116)||(22724004-22724074)


Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 10 - 294
Target Start/End: Complemental strand, 8988868 - 8988584
Alignment:
Q  10 ataatactgaaaaaagggtcgaatttgaatcattaaagtcttgaatcgattcaacagtgtaaaatgtgaaattcgagttgtcatgaagattaatatgaat 109  Q
    |||| ||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |    
T  8988868 ataacactgaaaaaagagtctgatttgaatcattaaagtcttgaatcgattcaacagtgtaaaatgtgaaatttgggttgtcatgaagattaatatgagt 8988769  T
Q  110 cagacaatatatgatttgaatcaaagaattccagatgaagattgatacgaatcatacaatctatgatttgaatcaacacattccaattggatattcaaag 209  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  8988768 cagacaatatatgatttgaatcaaagaatttcagatgaagattgatacgaatcatacaatctatgatttgaatcaacacattccaattggatattcaaaa 8988669  T
Q  210 tgacccaaatgaagattgatacgagtcaaggaacagtggtacaattcattcnnnnnnnncacaagatcagagaactcaaatgata 294  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||||        ||||||| ||||||||||||||||||    
T  8988668 tgacccaaatgaagattgatacgagtcaaggaacagttgtactattcattcaagaaaaacacaagaccagagaactcaaatgata 8988584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 19 - 233
Target Start/End: Complemental strand, 8993208 - 8992994
Alignment:
Q  19 aaaaaagggtcgaatttgaatcattaaagtcttgaatcgattcaacagtgtaaaa-tgtgaaattcgagttgtcatgaagattaatatgaatcagacaat 117  Q
    |||||||| ||  ||||||||||||||||||||||||||||||||  |||||||| ||||||||||| |||||||||||||||||||||||||| |||||    
T  8993208 aaaaaaggatcttatttgaatcattaaagtcttgaatcgattcaatggtgtaaaaatgtgaaattcgggttgtcatgaagattaatatgaatcaaacaat 8993109  T
Q  118 atatgatttgaatcaaagaattccagatgaagattgatacgaatcatacaatctatgatttgaatcaacacattccaattggatattcaaagtgacccaa 217  Q
     |||| ||  | | |||| ||||||||| |||||| |||| || || ||||| ||| |||||||||||  |||| ||  || | ||||||||||||||||    
T  8993108 -tatggttcaatttaaagtattccagattaagattcatacaaaccaaacaatttattatttgaatcaaagcatttcagatgaagattcaaagtgacccaa 8993010  T
Q  218 atgaagattgatacga 233  Q
    ||||||||||||||||    
T  8993009 atgaagattgatacga 8992994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 36 - 165
Target Start/End: Complemental strand, 16721598 - 16721469
Alignment:
Q  36 gaatcattaaagtcttgaatcgattcaacagtgtaaaatgtgaaattcgagttgtcatgaagattaatatgaatcagacaatatatgatttgaatcaaag 135  Q
    ||||||| |||||||||||||||||||| || |||||||||||||| |  ||||||||||||| | ||| |||||||| ||||| |||||   |||||||    
T  16721598 gaatcatcaaagtcttgaatcgattcaatagggtaaaatgtgaaatccaggttgtcatgaagactgataggaatcagagaatatttgattcatatcaaag 16721499  T
Q  136 aattccagatgaagattgatacgaatcata 165  Q
    ||||||| ||||||||||||| ||||||||    
T  16721498 aattccatatgaagattgatatgaatcata 16721469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 36 - 173
Target Start/End: Original strand, 14459322 - 14459459
Alignment:
Q  36 gaatcattaaagtcttgaatcgattcaacagtgtaaaatgtgaaattcgagttgtcatgaagattaatatgaatcagacaatatatgatttgaatcaaag 135  Q
    ||||||||||||| |||||| ||||||| |||||||||||||||||    ||||||||||||||| ||| | ||| |||||| | || ||  |||||| |    
T  14459322 gaatcattaaagtattgaattgattcaatagtgtaaaatgtgaaatcaaggttgtcatgaagattgataagtatcggacaatctttggttcaaatcaatg 14459421  T
Q  136 aattccagatgaagattgatacgaatcatacaatctat 173  Q
    |||| |||| ||| ||||||| ||||||||||||||||    
T  14459422 aatttcagacgaatattgataagaatcatacaatctat 14459459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 201 - 294
Target Start/End: Complemental strand, 9633588 - 9633495
Alignment:
Q  201 tattcaaagtgacccaaatgaagattgatacgagtcaaggaacagtggtacaattcattcnnnnnnnncacaagatcagagaactcaaatgata 294  Q
    ||||||||||||||||  ||||||||||||||| |||| |||||||| |||||||||||         ||||||||||||||||||||||||||    
T  9633588 tattcaaagtgacccagctgaagattgatacgaatcaaagaacagtgatacaattcattgaagcaaatcacaagatcagagaactcaaatgata 9633495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 201 - 294
Target Start/End: Original strand, 13603658 - 13603751
Alignment:
Q  201 tattcaaagtgacccaaatgaagattgatacgagtcaaggaacagtggtacaattcattcnnnnnnnncacaagatcagagaactcaaatgata 294  Q
    ||||||||||||||||  ||||||||||||||| |||| |||||||| |||||||||||         ||||||||||||||||||||||||||    
T  13603658 tattcaaagtgacccagctgaagattgatacgaatcaaagaacagtgatacaattcattgaagcaaatcacaagatcagagaactcaaatgata 13603751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 100
Target Start/End: Complemental strand, 13101430 - 13101374
Alignment:
Q  44 aaagtcttgaatcgattcaacagtgtaaaatgtgaaattcgagttgtcatgaagatt 100  Q
    |||||||||||||||||||| ||||||||||||||||| |  |||||||||||||||    
T  13101430 aaagtcttgaatcgattcaatagtgtaaaatgtgaaatccatgttgtcatgaagatt 13101374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 202 - 260
Target Start/End: Complemental strand, 18370998 - 18370940
Alignment:
Q  202 attcaaagtgacccaaatgaagattgatacgagtcaaggaacagtggtacaattcattc 260  Q
    ||||||||||||||| ||||||||| |||||| |||| |||||||| ||||||||||||    
T  18370998 attcaaagtgacccatatgaagattaatacgaatcaaagaacagtgatacaattcattc 18370940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 100
Target Start/End: Complemental strand, 22541925 - 22541870
Alignment:
Q  44 aaagtcttgaatcgattcaacagtgtaaaatgtgaaattcgagttgtcatgaagatt 100  Q
    |||||||||||| |||||||| ||||||||| |||||| || |||| ||||||||||    
T  22541925 aaagtcttgaattgattcaactgtgtaaaatatgaaatccgggttg-catgaagatt 22541870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 116
Target Start/End: Complemental strand, 22724074 - 22724004
Alignment:
Q  46 agtcttgaatcgattcaacagtgtaaaatgtgaaattcgagttgtcatgaagattaatatgaatcagacaa 116  Q
    |||||||| ||||| ||| |||||||||| |||||| | || ||||||||||||| ||  |||||||||||    
T  22724074 agtcttgagtcgatgcaatagtgtaaaatatgaaatcctagatgtcatgaagattgatgggaatcagacaa 22724004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University