View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19580_high_30 (Length: 255)
Name: NF19580_high_30
Description: NF19580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19580_high_30 |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 41984208 - 41983965
Alignment:
| Q |
1 |
atcaaacttagttgagatgactattttattcacatacagaaaacaattgataatcaactaatctttgtacaaccttnnnnnnnnnnnnnnnnnnntcact |
100 |
Q |
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| T |
41984208 |
atcaaacttagttgagatgactattttattcacatacagaaaacaagtgataatcaactaatctttgtacaaccttaaaaaaaaaaaaaaaaaa-tcact |
41984110 |
T |
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| Q |
101 |
atacaagaatgaagctaactagaaattgtttgtacaaatgctccctcacgtttcccttgaatagaaagtaactcacgagcaacatccttcaattcaagaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41984109 |
atacaagaatgaagctaactagaaattgtttgtacaaatgctccctcacgtttcccttgaatagaaagtaactcacgagcaacatccttcaattcaagaa |
41984010 |
T |
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| Q |
201 |
cacttccattgcatcttgatagcaactcagctgcttgttcctttg |
245 |
Q |
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| T |
41984009 |
cacttccattgcatcttgatagcaactcagctgcttgttcctttg |
41983965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 245
Target Start/End: Complemental strand, 41995366 - 41995273
Alignment:
| Q |
152 |
ttcccttgaatagaaagtaactcacgagcaacatccttcaattcaagaacacttccattgcatcttgatagcaactcagctgcttgttcctttg |
245 |
Q |
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|||||| |||| ||||| | |||| |||||| ||| || ||||| || |||||||||||||| |||||||||||| || ||||||||||||| |
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| T |
41995366 |
ttccctggaatggaaagcagctcatgagcaagatcattgaattcgagtgcacttccattgcattttgatagcaactgagtggcttgttcctttg |
41995273 |
T |
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