View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19580_high_32 (Length: 252)

Name: NF19580_high_32
Description: NF19580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19580_high_32
NF19580_high_32
[»] chr6 (5 HSPs)
chr6 (1-183)||(10082304-10082486)
chr6 (35-125)||(10098126-10098216)
chr6 (131-183)||(4443557-4443609)
chr6 (131-183)||(13512507-13512559)
chr6 (131-183)||(28694668-28694720)
[»] chr2 (3 HSPs)
chr2 (131-183)||(37364042-37364094)
chr2 (131-183)||(35600593-35600645)
chr2 (131-183)||(40656395-40656447)
[»] chr8 (1 HSPs)
chr8 (131-183)||(9764365-9764417)
[»] chr7 (2 HSPs)
chr7 (131-183)||(18334467-18334519)
chr7 (131-183)||(38702785-38702837)
[»] chr5 (2 HSPs)
chr5 (131-183)||(33886969-33887021)
chr5 (131-183)||(37567382-37567434)
[»] chr4 (1 HSPs)
chr4 (131-183)||(38965881-38965933)
[»] chr1 (1 HSPs)
chr1 (131-183)||(34676542-34676594)
[»] chr3 (1 HSPs)
chr3 (131-182)||(26249337-26249388)


Alignment Details
Target: chr6 (Bit Score: 155; Significance: 2e-82; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 10082486 - 10082304
Alignment:
Q  1 tgctattaatttgtacttagaattgtgtgccatcattgagagtgttagtgttattctggtgattctcatgtctataattattatatctacaaaagtatca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  10082486 tgctattaatttgtacttagaattgtgtgccatcattgagagtgttactgttaatttggtgattctcatgtctataattattatatctacaaaagtatca 10082387  T
Q  101 tgcaattattaatttaaaaggtcaactgaacaaggtgttgggcagcagagtggaagccgacaaaatgtgagggatcttccagt 183  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| || ||||||    
T  10082386 tgcaattattaatttaaaaggtcaattgaacaaggtgttgggcagcggagtggaagccgacaaaatgtgagggctcctccagt 10082304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 35 - 125
Target Start/End: Complemental strand, 10098216 - 10098126
Alignment:
Q  35 attgagagtgttagtgttattctggtgattctcatgtctataattattatatctacaaaagtatcatgcaattattaatttaaaaggtcaa 125  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||    
T  10098216 attgagagtgttagtgttattttggtgtttctcatgtctataattattatatctacagaagtaccatggaattattaatttaaaaggtcaa 10098126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 183
Target Start/End: Complemental strand, 4443609 - 4443557
Alignment:
Q  131 caaggtgttgggcagcagagtggaagccgacaaaatgtgagggatcttccagt 183  Q
    |||||||||||||||||||||||||||||| | | |||||||| || ||||||    
T  4443609 caaggtgttgggcagcagagtggaagccgagagagtgtgagggctcctccagt 4443557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 13512507 - 13512559
Alignment:
Q  131 caaggtgttgggcagcagagtggaagccgacaaaatgtgagggatcttccagt 183  Q
    |||||||||||||||||||||||||||||| | | |||||||| || ||||||    
T  13512507 caaggtgttgggcagcagagtggaagccgagagagtgtgagggctcctccagt 13512559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 28694668 - 28694720
Alignment:
Q  131 caaggtgttgggcagcagagtggaagccgacaaaatgtgagggatcttccagt 183  Q
    |||||||||||||||||||||||||||||| | | |||||||| || ||||||    
T  28694668 caaggtgttgggcagcagagtggaagccgagagagtgtgagggctcctccagt 28694720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 131 - 183
Target Start/End: Complemental strand, 37364094 - 37364042
Alignment:
Q  131 caaggtgttgggcagcagagtggaagccgacaaaatgtgagggatcttccagt 183  Q
    ||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  37364094 caaggtgttgggcagcagagtggaagccgacaaaatgtgagggctcctccagt 37364042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 35600593 - 35600645
Alignment:
Q  131 caaggtgttgggcagcagagtggaagccgacaaaatgtgagggatcttccagt 183  Q
    |||||||||||||||||||||||||||||| | | |||||||| || ||||||    
T  35600593 caaggtgttgggcagcagagtggaagccgagagagtgtgagggctcctccagt 35600645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 40656395 - 40656447
Alignment:
Q  131 caaggtgttgggcagcagagtggaagccgacaaaatgtgagggatcttccagt 183  Q
    |||||||||||||||||||||||||||||| | | |||||||| || ||||||    
T  40656395 caaggtgttgggcagcagagtggaagccgagagagtgtgagggctcctccagt 40656447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 9764365 - 9764417
Alignment:
Q  131 caaggtgttgggcagcagagtggaagccgacaaaatgtgagggatcttccagt 183  Q
    ||||||||||||||||| ||| ||||||||||||||||||||| || ||||||    
T  9764365 caaggtgttgggcagcatagtagaagccgacaaaatgtgagggctcctccagt 9764417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 183
Target Start/End: Complemental strand, 18334519 - 18334467
Alignment:
Q  131 caaggtgttgggcagcagagtggaagccgacaaaatgtgagggatcttccagt 183  Q
    |||||||||||||||||||||||||||||| | | |||||||| || ||||||    
T  18334519 caaggtgttgggcagcagagtggaagccgagagagtgtgagggctcctccagt 18334467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 183
Target Start/End: Complemental strand, 38702837 - 38702785
Alignment:
Q  131 caaggtgttgggcagcagagtggaagccgacaaaatgtgagggatcttccagt 183  Q
    |||||||||||||||||||||||||||||| | | |||||||| || ||||||    
T  38702837 caaggtgttgggcagcagagtggaagccgagagagtgtgagggctcctccagt 38702785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 183
Target Start/End: Complemental strand, 33887021 - 33886969
Alignment:
Q  131 caaggtgttgggcagcagagtggaagccgacaaaatgtgagggatcttccagt 183  Q
    |||||||||||||||||||||||||||||| | | |||||||| || ||||||    
T  33887021 caaggtgttgggcagcagagtggaagccgagagagtgtgagggctcctccagt 33886969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 183
Target Start/End: Complemental strand, 37567434 - 37567382
Alignment:
Q  131 caaggtgttgggcagcagagtggaagccgacaaaatgtgagggatcttccagt 183  Q
    |||||||||||||||||||||||||||||| | | |||||||| || ||||||    
T  37567434 caaggtgttgggcagcagagtggaagccgagagagtgtgagggctcctccagt 37567382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 183
Target Start/End: Complemental strand, 38965933 - 38965881
Alignment:
Q  131 caaggtgttgggcagcagagtggaagccgacaaaatgtgagggatcttccagt 183  Q
    |||||||||||||||||||||||||||||| | | |||||||| || ||||||    
T  38965933 caaggtgttgggcagcagagtggaagccgagagagtgtgagggctcctccagt 38965881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 183
Target Start/End: Complemental strand, 34676594 - 34676542
Alignment:
Q  131 caaggtgttgggcagcagagtggaagccgacaaaatgtgagggatcttccagt 183  Q
    |||||||||||||||||||||||||||||| | | |||||||| || ||||||    
T  34676594 caaggtgttgggcagcagagtggaagccgagagagtgtgagggctcctccagt 34676542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 182
Target Start/End: Original strand, 26249337 - 26249388
Alignment:
Q  131 caaggtgttgggcagcagagtggaagccgacaaaatgtgagggatcttccag 182  Q
    |||||||||||||||||||||||||||||| | | |||||||| || |||||    
T  26249337 caaggtgttgggcagcagagtggaagccgagagagtgtgagggctcctccag 26249388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University