View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19580_low_11 (Length: 403)
Name: NF19580_low_11
Description: NF19580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19580_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 11 - 291
Target Start/End: Original strand, 19175262 - 19175542
Alignment:
| Q |
11 |
cacagacataggacacaacattgacaccgacacatgacataaataataatttattgtaattatatgtgttgttataggacactaaacaatctttcaatac |
110 |
Q |
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| T |
19175262 |
cacagacataggacacaacattgacactgacacatgacacaaataataatttattgtaattatatgcgttgttgtaggacactaaacaatctttcaatac |
19175361 |
T |
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| Q |
111 |
gaagtgtctctactaaacacagatacaaaggacaaagtatattaattggtctaaaaaagcaataaaatattttgagaatataaacttttaaaccataaaa |
210 |
Q |
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| T |
19175362 |
gaagtgtctctactacatacacatacaaaggatatagtatattaattggtctaaaaaagcaataaaatattttgagaatataaactttttaaccataaaa |
19175461 |
T |
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| Q |
211 |
ttctttcaacactactgcatagagtttagagactggtctcatggtctccttatataaatcaaatcatagtttttaattgta |
291 |
Q |
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| T |
19175462 |
ttctttcaacactactccatagagtttagagactggtctcatggtctccttatacaaatcaaatcatagttcttaattgta |
19175542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 292 - 388
Target Start/End: Original strand, 19175579 - 19175675
Alignment:
| Q |
292 |
caaaggtcttgaattgacattacaagagcaattgtggccgcatcggtcacatttgcccacatcttactacaatataaagattcacaacatcttgacc |
388 |
Q |
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| T |
19175579 |
caaaggtcttgaagtgacatcacaagagcaattctggccgcatcgatcacatttgcccacatcttactacaatataaagattcacaacgtcttgacc |
19175675 |
T |
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