View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19580_low_12 (Length: 400)
Name: NF19580_low_12
Description: NF19580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19580_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 10 - 382
Target Start/End: Complemental strand, 49645300 - 49644927
Alignment:
| Q |
10 |
attattctttaaaataagatgacatgatggaatatcttatagttttcaaattctacgaatatttataggctacatatgtatcgtaaactttcaattcaat |
109 |
Q |
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| T |
49645300 |
attattcgttaaaataagatgacatgatggaatatcttatagttttcaaattctacgaatatttataggctacatatgtatcgtaaactttcaattcaat |
49645201 |
T |
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| Q |
110 |
gttaaattgatttcattcgccttttaaaaagagttattaaaggtgtaagaatgctaagtttgacaagtgccaatagatcttgaatctctcatatatataa |
209 |
Q |
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| T |
49645200 |
gttaaattgatttcattcgccttttaaaaagagttattaaaggtgtaagaatgttaagtttgacaagtgccaatagatcttgaatctctcatatatataa |
49645101 |
T |
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| Q |
210 |
ttgatcaactcctaaactaagtgagtcgatatatgtctagtttaagttcaacttcaatttattgctcaagtttagttcatgaattgagttccacagatta |
309 |
Q |
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| T |
49645100 |
ttgatcaactcctaaactaagtgagtcgagatatgtctagtttaagttcaacttcaatttattgctcaagtttagttcatgaattgagttccacagatta |
49645001 |
T |
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| Q |
310 |
attgtc-agtccaaactatgtagcaaaagaaaaatacaataaaacacctcatacacactgctcaaattcgaact |
382 |
Q |
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| T |
49645000 |
attgtcaagtccaaactatgtagcaaaagaaaaataaaataaaacacctcatacacaccgctcaaattcgaact |
49644927 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 175
Target Start/End: Original strand, 9083531 - 9083591
Alignment:
| Q |
115 |
attgatttcattcgccttttaaaaagagttattaaaggtgtaagaatgctaagtttgacaa |
175 |
Q |
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| T |
9083531 |
attgatttaattcgccttctacaaagagatattaaaggtgtaagtatgttaagtatgacaa |
9083591 |
T |
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