View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19580_low_15 (Length: 378)

Name: NF19580_low_15
Description: NF19580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19580_low_15
NF19580_low_15
[»] chr7 (5 HSPs)
chr7 (160-378)||(6849739-6849957)
chr7 (160-378)||(6890175-6890393)
chr7 (160-378)||(6845165-6845382)
chr7 (161-378)||(30597060-30597274)
chr7 (11-78)||(6850083-6850150)
[»] chr8 (2 HSPs)
chr8 (171-321)||(25462176-25462326)
chr8 (110-165)||(25462063-25462117)
[»] chr2 (3 HSPs)
chr2 (235-291)||(38990188-38990244)
chr2 (246-291)||(43866512-43866557)
chr2 (310-378)||(43863103-43863171)
[»] chr4 (2 HSPs)
chr4 (331-378)||(52187826-52187873)
chr4 (250-291)||(52187913-52187954)
[»] chr3 (2 HSPs)
chr3 (260-291)||(1187645-1187676)
chr3 (258-291)||(477095-477128)
[»] chr5 (4 HSPs)
chr5 (249-291)||(28092164-28092206)
chr5 (329-378)||(25216914-25216963)
chr5 (329-378)||(25281069-25281118)
chr5 (258-291)||(33957508-33957541)
[»] chr1 (1 HSPs)
chr1 (346-378)||(28927460-28927492)


Alignment Details
Target: chr7 (Bit Score: 139; Significance: 1e-72; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 160 - 378
Target Start/End: Complemental strand, 6849957 - 6849739
Alignment:
Q  160 caactttcagcaactaaactaactgcattgcaaaaaccaatccagagaaattatgctcaacaagttaagtgcacatttaccttaacaaatctatgatttc 259  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||     
T  6849957 caactttcagcaactaaactaactgcattgcaaaaaccaaaccagagaaattatgctcaacaagttaaatgcacatttaccttaacaaatctatgatttt 6849858  T
Q  260 aacctttgccgagggtgagttttgaagcaaaaggtaaaaagtcctattaggtatcgatgaaggtatgcacatttttactttaagtaacttcaagttacac 359  Q
     |||||||| |||||||||||||||||||||| || |||||||| ||||||||| || |||||| | | | ||||||||  |||| |||||||||  |||    
T  6849857 gacctttgctgagggtgagttttgaagcaaaaagtcaaaagtcccattaggtatggaagaaggtgtcctcgtttttactccaagtgacttcaagtcccac 6849758  T
Q  360 aaggaatggaactcaacct 378  Q
    ||||||||||| |||||||    
T  6849757 aaggaatggaattcaacct 6849739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 160 - 378
Target Start/End: Complemental strand, 6890393 - 6890175
Alignment:
Q  160 caactttcagcaactaaactaactgcattgcaaaaaccaatccagagaaattatgctcaacaagttaagtgcacatttaccttaacaaatctatgatttc 259  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| ||| | ||||||||||||||| ||||||||||||| ||   ||||||||||||    
T  6890393 caactttcagcaactaaactaactgcattgcaaaaaccaaaccagaaaaactgtgctcaacaagttaaatgcacatttacctgaaaggatctatgatttc 6890294  T
Q  260 aacctttgccgagggtgagttttgaagcaaaaggtaaaaagtcctattaggtatcgatgaaggtatgcacatttttactttaagtaacttcaagttacac 359  Q
    ||||||||  |||||||||||||||||||||| || |||||||| |||||||||  |||||||| | | | |||||||| ||||| |||||||| |||||    
T  6890293 aacctttgttgagggtgagttttgaagcaaaaagtcaaaagtcccattaggtatgcatgaaggtgtcctcgtttttactctaagtgacttcaagctacac 6890194  T
Q  360 aaggaatggaactcaacct 378  Q
    |||||||| ||||||||||    
T  6890193 aaggaatgaaactcaacct 6890175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 160 - 378
Target Start/End: Complemental strand, 6845382 - 6845165
Alignment:
Q  160 caactttcagcaactaaactaactgcattgcaaaaaccaatccagagaaattatgctcaacaagttaagtgcacatttaccttaacaaatctatgatttc 259  Q
    |||||||||  ||||||||| ||||||||||||||||||| ||||| ||||| ||||||| ||||||| |||| ||||||||| |  |||||||||||||    
T  6845382 caactttcaataactaaactcactgcattgcaaaaaccaaaccagaaaaattgtgctcaataagttaaatgca-atttaccttcaacaatctatgatttc 6845284  T
Q  260 aacctttgccgagggtgagttttgaagcaaaaggtaaaaagtcctattaggtatcgatgaaggtatgcacatttttactttaagtaacttcaagttacac 359  Q
    ||||||||| |||||||||||||||||||||| ||| ||||| | ||||| ||| ||||||||| | | |||||||||| ||||| ||||||| ||||||    
T  6845283 aacctttgctgagggtgagttttgaagcaaaaagtacaaagttccattagatatggatgaaggtgtcctcatttttactctaagtgacttcaaattacac 6845184  T
Q  360 aaggaatggaactcaacct 378  Q
    |||||||||||||||||||    
T  6845183 aaggaatggaactcaacct 6845165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 161 - 378
Target Start/End: Original strand, 30597060 - 30597274
Alignment:
Q  161 aactttcagcaactaaactaactgcattgcaaaaaccaatccagagaaattatgctcaacaagttaagtgcacatttaccttaacaaatctatgatttca 260  Q
    |||||||||||||||||||||||||||||||||||  || ||||| || || || |||||| |||    ||||||||||||   | |||||| |||||||    
T  30597060 aactttcagcaactaaactaactgcattgcaaaaattaaaccagaaaatttttgttcaacaggttgtaagcacatttacct---ccaatctacgatttca 30597156  T
Q  261 acctttgccgagggtgagttttgaagcaaaaggtaaaaagtcctattaggtatcgatgaaggtatgcacatttttactttaagtaacttcaagttacaca 360  Q
    |||||||| ||||||||||||||||| |||| ||| || || | |||||| || ||||| ||||||| |||||| |||||||||||||||||||||||||    
T  30597157 acctttgctgagggtgagttttgaagtaaaaagtacaacgttccattaggcatggatgagggtatgcgcattttcactttaagtaacttcaagttacaca 30597256  T
Q  361 aggaatggaactcaacct 378  Q
    ||||||||||||||||||    
T  30597257 aggaatggaactcaacct 30597274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 6850150 - 6850083
Alignment:
Q  11 catcatcaaataagcttagtactataacatgcacaaaaagaaccattaaactgcattacagggatata 78  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  6850150 catcatcaaataagcttagtactataacatgcacaaaaagaaccattgaactgcattacagggatata 6850083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 171 - 321
Target Start/End: Original strand, 25462176 - 25462326
Alignment:
Q  171 aactaaactaactgcattgcaaaaaccaatccagagaaattatgctcaacaagttaagtgcacatttaccttaacaaatctatgatttcaacctttgccg 270  Q
    ||||||||||||||||||||||||||||  ||| | ||||| ||||||||||||| | |  | ||||||||| || ||| |||||||||||||||||| |    
T  25462176 aactaaactaactgcattgcaaaaaccagaccacaaaaattgtgctcaacaagttgaattgagatttaccttcaccaatttatgatttcaacctttgctg 25462275  T
Q  271 agggtgagttttgaagcaaaaggtaaaaagtcctattaggtatcgatgaag 321  Q
    | || |||||||||||||||| | | ||||| | ||| ||||| |||||||    
T  25462276 aaggcgagttttgaagcaaaaagaacaaagttccatttggtatggatgaag 25462326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 110 - 165
Target Start/End: Original strand, 25462063 - 25462117
Alignment:
Q  110 taaagcaaaaccatataaattccttcacatctttgaattcttttcacattcaactt 165  Q
    ||||| ||||| |||||| |||||||||||||||| ||| ||||||||||||||||    
T  25462063 taaagaaaaacaatataa-ttccttcacatctttgcatttttttcacattcaactt 25462117  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 235 - 291
Target Start/End: Complemental strand, 38990244 - 38990188
Alignment:
Q  235 tttaccttaacaaatctatgatttcaacctttgccgagggtgagttttgaagcaaaa 291  Q
    |||||||| |||||  |||||| |||||||||||||||||||||||||||| |||||    
T  38990244 tttacctttacaaacgtatgatgtcaacctttgccgagggtgagttttgaatcaaaa 38990188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 291
Target Start/End: Original strand, 43866512 - 43866557
Alignment:
Q  246 aaatctatgatttcaacctttgccgagggtgagttttgaagcaaaa 291  Q
    |||| |||||| |||||||||| ||||||||||||||||| |||||    
T  43866512 aaatgtatgatgtcaacctttgtcgagggtgagttttgaatcaaaa 43866557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 378
Target Start/End: Original strand, 43863103 - 43863171
Alignment:
Q  310 gtatcgatgaaggtatgcacatttttactttaagtaacttcaagttacacaaggaatggaactcaacct 378  Q
    |||||||||||||||||  || ||| | ||| ||| |||||||||||||||||||| ||| ||| ||||    
T  43863103 gtatcgatgaaggtatgaccactttaattttcagtgacttcaagttacacaaggaagggagctctacct 43863171  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 331 - 378
Target Start/End: Complemental strand, 52187873 - 52187826
Alignment:
Q  331 tttttactttaagtaacttcaagttacacaaggaatggaactcaacct 378  Q
    |||||| ||| ||| |||||||| ||||||||||||||||||||||||    
T  52187873 tttttattttcagtgacttcaaggtacacaaggaatggaactcaacct 52187826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 291
Target Start/End: Complemental strand, 52187954 - 52187913
Alignment:
Q  250 ctatgatttcaacctttgccgagggtgagttttgaagcaaaa 291  Q
    ||||||| ||||| |||||||||||||||||||||| |||||    
T  52187954 ctatgatgtcaacttttgccgagggtgagttttgaatcaaaa 52187913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 260 - 291
Target Start/End: Complemental strand, 1187676 - 1187645
Alignment:
Q  260 aacctttgccgagggtgagttttgaagcaaaa 291  Q
    ||||||||||||||||||||||||||||||||    
T  1187676 aacctttgccgagggtgagttttgaagcaaaa 1187645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 291
Target Start/End: Complemental strand, 477128 - 477095
Alignment:
Q  258 tcaacctttgccgagggtgagttttgaagcaaaa 291  Q
    ||||||||||| ||||||||||||||||||||||    
T  477128 tcaacctttgctgagggtgagttttgaagcaaaa 477095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 291
Target Start/End: Complemental strand, 28092206 - 28092164
Alignment:
Q  249 tctatgatttcaacctttgccgagggtgagttttgaagcaaaa 291  Q
    ||||| || |||||||||||||||||||||||||||| |||||    
T  28092206 tctataatgtcaacctttgccgagggtgagttttgaatcaaaa 28092164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 378
Target Start/End: Complemental strand, 25216963 - 25216914
Alignment:
Q  329 catttttactttaagtaacttcaagttacacaaggaatggaactcaacct 378  Q
    ||||| |||||||||| ||||||||||| |||||| | ||||||||||||    
T  25216963 catttctactttaagtgacttcaagttatacaaggtagggaactcaacct 25216914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 378
Target Start/End: Complemental strand, 25281118 - 25281069
Alignment:
Q  329 catttttactttaagtaacttcaagttacacaaggaatggaactcaacct 378  Q
    ||||| |||||||||| ||||||||||| |||||| | ||||||||||||    
T  25281118 catttctactttaagtgacttcaagttatacaaggtagggaactcaacct 25281069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 291
Target Start/End: Original strand, 33957508 - 33957541
Alignment:
Q  258 tcaacctttgccgagggtgagttttgaagcaaaa 291  Q
    |||||||||||||| |||||||||||||||||||    
T  33957508 tcaacctttgccgaaggtgagttttgaagcaaaa 33957541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 346 - 378
Target Start/End: Original strand, 28927460 - 28927492
Alignment:
Q  346 acttcaagttacacaaggaatggaactcaacct 378  Q
    ||||||| |||||||||||||||||||||||||    
T  28927460 acttcaatttacacaaggaatggaactcaacct 28927492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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