View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19580_low_16 (Length: 370)

Name: NF19580_low_16
Description: NF19580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19580_low_16
NF19580_low_16
[»] chr5 (5 HSPs)
chr5 (1-352)||(38089038-38089388)
chr5 (294-352)||(43146407-43146465)
chr5 (272-352)||(20256894-20256969)
chr5 (294-349)||(29668581-29668635)
chr5 (294-349)||(2134816-2134871)
[»] chr8 (6 HSPs)
chr8 (295-352)||(9305293-9305350)
chr8 (294-352)||(29525930-29525988)
chr8 (297-352)||(36675658-36675713)
chr8 (294-352)||(35163002-35163060)
chr8 (273-352)||(30233864-30233938)
chr8 (294-337)||(36676482-36676525)
[»] chr3 (6 HSPs)
chr3 (294-352)||(35637280-35637338)
chr3 (301-352)||(46411192-46411243)
chr3 (295-349)||(49323241-49323295)
chr3 (297-352)||(3984450-3984505)
chr3 (294-352)||(2663239-2663296)
chr3 (294-336)||(28212615-28212657)
[»] chr2 (4 HSPs)
chr2 (293-352)||(39822957-39823016)
chr2 (294-352)||(18058785-18058843)
chr2 (294-352)||(25628886-25628944)
chr2 (297-352)||(13466895-13466950)
[»] chr7 (3 HSPs)
chr7 (304-352)||(48065062-48065110)
chr7 (294-352)||(24879142-24879200)
chr7 (294-343)||(37025600-37025649)
[»] chr1 (6 HSPs)
chr1 (275-352)||(43824194-43824267)
chr1 (294-352)||(19563370-19563428)
chr1 (297-352)||(47459175-47459230)
chr1 (294-336)||(36384395-36384437)
chr1 (294-346)||(18283317-18283369)
chr1 (275-342)||(37028555-37028618)
[»] chr4 (2 HSPs)
chr4 (302-352)||(50470025-50470075)
chr4 (294-352)||(31799338-31799396)
[»] chr6 (1 HSPs)
chr6 (294-346)||(21508453-21508505)


Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 38089388 - 38089038
Alignment:
Q  1 ccatgacatctactaatacagacataacaaagaaatgtgaggaaaaccatctcgagcaaccactagacaaaattaaggatgtcaatttgttcttgcaagt 100  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  38089388 ccatgacatctactaatacagacataacaaagaaatgtgaggcaaaccctctcgagcaaccactagacaaaattaaggatgtcaatttgtacttgcaagt 38089289  T
Q  101 gaaagtccatttgagaaatatcctacttgaagcctcgcgagaagaaagtttttctattggagatgcggattagggagaaagtttt-ccgtaggtgttttt 199  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||  |||||||||| || |||||||||||||| ||||||||||||||    
T  38089288 gaaagtccatttgagaaatatcccacttgaagccttgcgagaagagagtttttcttgtggagatgcgtatgagggagaaagttttcccgtaggtgttttt 38089189  T
Q  200 gaggtggagattgggatcatactcgtcaacc--cgtgcgacctatctctaagtttattaaaataatatcatatgttgagatattcttgcatcaaccaact 297  Q
    |||||||||||||||||||||||||||||||  |||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||    |||||    
T  38089188 gaggtggagattgggatcatactcgtcaacccgcgtgcgacctgtccctaagtttattaaaataatattatatgttgagatattcttgcat----caact 38089093  T
Q  298 ctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttatt 352  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  38089092 ctcatccaacacattattcttacacccaaccaataaaaatatgacacatgttatt 38089038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 294 - 352
Target Start/End: Complemental strand, 43146465 - 43146407
Alignment:
Q  294 aactctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttatt 352  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  43146465 aactctcacccaacacattattcttacacccaaccaataaaaatatgacacatgttatt 43146407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 272 - 352
Target Start/End: Original strand, 20256894 - 20256969
Alignment:
Q  272 ttgagatattcttgcatcaaccaactctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttatt 352  Q
    |||||||||||||||||     |||||||| |||||||||| ||||||||| ||| |||||||||||||||||||||||||    
T  20256894 ttgagatattcttgcat----aaactctcatccaacacatttttcttacacccaa-caataaaaatatgacacatgttatt 20256969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 294 - 349
Target Start/End: Complemental strand, 29668635 - 29668581
Alignment:
Q  294 aactctcacccaacacattattcttacactcaaccaataaaaatatgacacatgtt 349  Q
    |||||||||| |||||||||||||||||  ||||||||||||||||||||||||||    
T  29668635 aactctcacc-aacacattattcttacatccaaccaataaaaatatgacacatgtt 29668581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 294 - 349
Target Start/End: Complemental strand, 2134871 - 2134816
Alignment:
Q  294 aactctcacccaacacattattcttacactcaaccaataaaaatatgacacatgtt 349  Q
    |||||||| ||||||||| ||| ||||||  |||||||||||| ||||||||||||    
T  2134871 aactctcagccaacacatcattgttacaccaaaccaataaaaaaatgacacatgtt 2134816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 295 - 352
Target Start/End: Complemental strand, 9305350 - 9305293
Alignment:
Q  295 actctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttatt 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9305350 actctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttatt 9305293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 294 - 352
Target Start/End: Complemental strand, 29525988 - 29525930
Alignment:
Q  294 aactctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttatt 352  Q
    |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||    
T  29525988 aactctcaccaaacacattattcttacacccaaccaataaaaatatgacacatgttatt 29525930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 297 - 352
Target Start/End: Original strand, 36675658 - 36675713
Alignment:
Q  297 tctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttatt 352  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||    
T  36675658 tctcacccaatacattattcttacacccaaccaataaaaatatgacacatattatt 36675713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 294 - 352
Target Start/End: Original strand, 35163002 - 35163060
Alignment:
Q  294 aactctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttatt 352  Q
    |||||||  |||||||||||||||||||| | |||||||||||||||||||||||||||    
T  35163002 aactctcttccaacacattattcttacacccgaccaataaaaatatgacacatgttatt 35163060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 273 - 352
Target Start/End: Complemental strand, 30233938 - 30233864
Alignment:
Q  273 tgagatattcttgcatcaaccaactctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttatt 352  Q
    ||||||||||||||||     |||||||||| ||||||| |||||||||| ||||||||||||| |||||||||||||||    
T  30233938 tgagatattcttgcat----gaactctcacctaacacatcattcttacacccaaccaataaaaa-atgacacatgttatt 30233864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 294 - 337
Target Start/End: Complemental strand, 36676525 - 36676482
Alignment:
Q  294 aactctcacccaacacattattcttacactcaaccaataaaaat 337  Q
    |||||| ||||||||||||||||||||| ||||||||| |||||    
T  36676525 aactcttacccaacacattattcttacattcaaccaattaaaat 36676482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 294 - 352
Target Start/End: Complemental strand, 35637338 - 35637280
Alignment:
Q  294 aactctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttatt 352  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  35637338 aactctcacccaacacattattcttacacccaaccaataaaaatatgacacatgttatt 35637280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 301 - 352
Target Start/End: Complemental strand, 46411243 - 46411192
Alignment:
Q  301 acccaacacattattcttacactcaaccaataaaaatatgacacatgttatt 352  Q
    |||||||||||||||||||||| | ||||||| | |||||||||||||||||    
T  46411243 acccaacacattattcttacacccgaccaatagagatatgacacatgttatt 46411192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 349
Target Start/End: Complemental strand, 49323295 - 49323241
Alignment:
Q  295 actctcacccaacacattattcttacactcaaccaataaaaatatgacacatgtt 349  Q
    |||||||| |||||||| ||||||||||  |||||||||||| ||||||||||||    
T  49323295 actctcactcaacacatcattcttacacctaaccaataaaaagatgacacatgtt 49323241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 352
Target Start/End: Original strand, 3984450 - 3984505
Alignment:
Q  297 tctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttatt 352  Q
    ||||||| || |||| ||||||| |||| ||||||||||| |||||||||||||||    
T  3984450 tctcaccaaagacatcattcttaaactcgaccaataaaaaaatgacacatgttatt 3984505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 352
Target Start/End: Original strand, 2663239 - 2663296
Alignment:
Q  294 aactctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttatt 352  Q
    ||||||||| |||||||| ||||||||||  |||||||||||| |||||| ||||||||    
T  2663239 aactctcactcaacacatcattcttacaccaaaccaataaaaa-atgacatatgttatt 2663296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 336
Target Start/End: Original strand, 28212615 - 28212657
Alignment:
Q  294 aactctcacccaacacattattcttacactcaaccaataaaaa 336  Q
    |||||||| ||||||||| |||||||||| |||||||||||||    
T  28212615 aactctcatccaacacatcattcttacacccaaccaataaaaa 28212657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 293 - 352
Target Start/End: Complemental strand, 39823016 - 39822957
Alignment:
Q  293 caactctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttatt 352  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  39823016 caactctcacccaacacatcattcttacacccaaccaataaaaatatgacacatgttatt 39822957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 294 - 352
Target Start/End: Original strand, 18058785 - 18058843
Alignment:
Q  294 aactctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttatt 352  Q
    ||||||||||||||||||||||||||||||  || ||||||||||||||||||||||||    
T  18058785 aactctcacccaacacattattcttacacttgactaataaaaatatgacacatgttatt 18058843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 294 - 352
Target Start/End: Original strand, 25628886 - 25628944
Alignment:
Q  294 aactctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttatt 352  Q
    |||||||||||||||||||||| |||||| |||||||||||||||||| |||| |||||    
T  25628886 aactctcacccaacacattatttttacacccaaccaataaaaatatgatacatattatt 25628944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 297 - 352
Target Start/End: Complemental strand, 13466950 - 13466895
Alignment:
Q  297 tctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttatt 352  Q
    ||||| ||||||||| ||||||||||| ||||||||||||||||||| || |||||    
T  13466950 tctcatccaacacataattcttacactaaaccaataaaaatatgacatatattatt 13466895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 304 - 352
Target Start/End: Complemental strand, 48065110 - 48065062
Alignment:
Q  304 caacacattattcttacactcaaccaataaaaatatgacacatgttatt 352  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  48065110 caacacattattcttacacccaaccaataaaaatatgacacatgttatt 48065062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 294 - 352
Target Start/End: Complemental strand, 24879200 - 24879142
Alignment:
Q  294 aactctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttatt 352  Q
    ||||||||||||||||||||||||||||| | | |||||||||||||||| ||||||||    
T  24879200 aactctcacccaacacattattcttacacccgatcaataaaaatatgacatatgttatt 24879142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 294 - 343
Target Start/End: Complemental strand, 37025649 - 37025600
Alignment:
Q  294 aactctcacccaacacattattcttacactcaaccaataaaaatatgaca 343  Q
    |||||||||||||||||| ||||||||||||| ||||| |||||| ||||    
T  37025649 aactctcacccaacacatcattcttacactcatccaatcaaaataagaca 37025600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 275 - 352
Target Start/End: Original strand, 43824194 - 43824267
Alignment:
Q  275 agatattcttgcatcaaccaactctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttatt 352  Q
    ||||||||||||||||||    |||||| |||||||| |||||||||| ||||||||||||| |||||||||||||||    
T  43824194 agatattcttgcatcaac----tctcactcaacacatcattcttacacccaaccaataaaaaaatgacacatgttatt 43824267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 294 - 352
Target Start/End: Original strand, 19563370 - 19563428
Alignment:
Q  294 aactctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttatt 352  Q
    ||||||||||||| |||| |||||||||| ||||||||||||||||||||||| |||||    
T  19563370 aactctcacccaagacatcattcttacacccaaccaataaaaatatgacacatattatt 19563428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 297 - 352
Target Start/End: Complemental strand, 47459230 - 47459175
Alignment:
Q  297 tctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttatt 352  Q
    ||||||| |||||||||||||||||  ||||||||||||| |||||||||||||||    
T  47459230 tctcacctaacacattattcttacatccaaccaataaaaaaatgacacatgttatt 47459175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 294 - 336
Target Start/End: Complemental strand, 36384437 - 36384395
Alignment:
Q  294 aactctcacccaacacattattcttacactcaaccaataaaaa 336  Q
    |||||||||||||||||| |||||||||| |||||||||||||    
T  36384437 aactctcacccaacacatcattcttacacccaaccaataaaaa 36384395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 346
Target Start/End: Original strand, 18283317 - 18283369
Alignment:
Q  294 aactctcacccaacacattattcttacactcaaccaataaaaatatgacacat 346  Q
    |||||||||||||||||| ||| ||||||||  ||||| ||||||||||||||    
T  18283317 aactctcacccaacacatcatttttacactctgccaatgaaaatatgacacat 18283369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 342
Target Start/End: Original strand, 37028555 - 37028618
Alignment:
Q  275 agatattcttgcatcaaccaactctcacccaacacattattcttacactcaaccaataaaaatatgac 342  Q
    ||||||||||||||||||    ||||||| || |||| |||||||||| ||||||||||||| |||||    
T  37028555 agatattcttgcatcaac----tctcaccgaatacatcattcttacacccaaccaataaaaaaatgac 37028618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 302 - 352
Target Start/End: Original strand, 50470025 - 50470075
Alignment:
Q  302 cccaacacattattcttacactcaaccaataaaaatatgacacatgttatt 352  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  50470025 cccaacacattattcttacatccaaccaataaaaatatgacacatgttatt 50470075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 294 - 352
Target Start/End: Complemental strand, 31799396 - 31799338
Alignment:
Q  294 aactctcacccaacacattattcttacactcaaccaataaaaatatgacacatgttatt 352  Q
    |||||||||| ||||||| ||||||| |||||| ||||||||| |||||||||||||||    
T  31799396 aactctcaccaaacacatcattcttatactcaatcaataaaaaaatgacacatgttatt 31799338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 294 - 346
Target Start/End: Original strand, 21508453 - 21508505
Alignment:
Q  294 aactctcacccaacacattattcttacactcaaccaataaaaatatgacacat 346  Q
    |||||| |||||||| ||||||||||||| |||||||||||||||||||||||    
T  21508453 aactcttacccaacatattattcttacacgcaaccaataaaaatatgacacat 21508505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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