View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19580_low_17 (Length: 363)
Name: NF19580_low_17
Description: NF19580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19580_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 2154863 - 2154518
Alignment:
| Q |
1 |
caaaatcaatgctgccctttannnnnnngctgaaacatttggtatctttccaagtcgaagttgagtacaatcttattatagatatttatttttaaaatgt |
100 |
Q |
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|||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2154863 |
caaaatcaatgccgccctttatttttttgctgaaacatttggtatctttccaagtcgaagttgagtacaatcttattatagatatttatttttaaaatgt |
2154764 |
T |
|
| Q |
101 |
agtacaagaaggaatgatatttttagatttggaatctatgaaaattttcttgtttctcacattctcttgttaaaaaactttgtacaatgtcactagtgtc |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2154763 |
agtacaagaatgaatgatatttttagatttggaatctatgaaaattttcttgtttctcacattctcttgttaaaaaactttgtacaatgtcactagtgtc |
2154664 |
T |
|
| Q |
201 |
gaagcctctaaataaatattgaatcattctatgaattgattcataagatttgtttattcttttagtatatatttggtgatttgaatcaactatttggtaa |
300 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2154663 |
gaagcctctaaataaatattgaatcattctatgcattgattcataagatttgtttattcttgtagtatatatttggtgatttgaatcaactatttggtaa |
2154564 |
T |
|
| Q |
301 |
aaatacatgtgagtaactttaacataaaatatagggttaggaattg |
346 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2154563 |
aaatacatgtgagtaactttaacataaaatatagggttaggaattg |
2154518 |
T |
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