View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19580_low_19 (Length: 354)

Name: NF19580_low_19
Description: NF19580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19580_low_19
NF19580_low_19
[»] chr7 (6 HSPs)
chr7 (23-308)||(6889571-6889859)
chr7 (22-221)||(6849013-6849210)
chr7 (20-308)||(6844573-6844858)
chr7 (219-343)||(6849371-6849495)
chr7 (23-154)||(30597732-30597863)
chr7 (192-307)||(30597579-30597694)
[»] scaffold0210 (1 HSPs)
scaffold0210 (116-154)||(15863-15901)
[»] chr6 (2 HSPs)
chr6 (116-157)||(8656155-8656196)
chr6 (116-156)||(7174891-7174931)
[»] chr4 (1 HSPs)
chr4 (75-156)||(52187335-52187416)
[»] chr3 (1 HSPs)
chr3 (116-156)||(7058317-7058357)


Alignment Details
Target: chr7 (Bit Score: 110; Significance: 2e-55; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 23 - 308
Target Start/End: Original strand, 6889571 - 6889859
Alignment:
Q  23 ctttcgtgttggagatgatggttatgctgagcctttttcggcatttagcagtttgaacagtttgaccattcagtattgtagagttctcgaagtacaaaac 122  Q
    ||||| |||||  ||||||||| || |||||||||||||||||||||| |||||||| ||||||| ||||| |  ||||| |||||| || | |||||||    
T  6889571 ctttcctgttgacgatgatggtcatactgagcctttttcggcatttagtagtttgaatagtttgatcattcggggttgtaaagttcttgatgaacaaaac 6889670  T
Q  123 ctctgcatatcaagtgctacacttgccaatttaactttaaa-agtgtatcacc--accaatatggcaaaatcgagttatctactccaagtctttgcacct 219  Q
    ||||| |||| |||||||||||||||||||||||||||| | | ||  |   |  || | ||||||||||||||||||||||||||||||||||||||||    
T  6889671 ctctggatattaagtgctacacttgccaatttaactttagacactggttgggcctacaattatggcaaaatcgagttatctactccaagtctttgcacct 6889770  T
Q  220 ttgtctttggttgtacaggggatattcctgatctgagactacgtgggagagagagcaatctatcttccatcaaacatgtaaatattgat 308  Q
    ||||||||| |||||  || | | |||||| ||||| ||||| ||||| |||||||||||| |||||  ||||||||||||| ||||||    
T  6889771 ttgtctttgtttgtatcggaggttttcctgctctgaaactacatgggatagagagcaatctctcttctgtcaaacatgtaaagattgat 6889859  T

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Target: chr7; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 22 - 221
Target Start/End: Original strand, 6849013 - 6849210
Alignment:
Q  22 tctttcgtgttggagatgatggttatgctgagcctttttcggcatttagcagtttgaacagtttgaccattcagtattgtagagttctcgaagtacaaaa 121  Q
    |||||| |||||| |||||||||| |||||| |||||||| ||||||||| ||||||||||||||| |||||  ||||||||||||||  |   ||||||    
T  6849013 tctttcatgttggtgatgatggttgtgctgaacctttttccgcatttagctgtttgaacagtttgatcattcgttattgtagagttcttaatagacaaaa 6849112  T
Q  122 cctctgcatatcaagtgctacacttgccaatttaactttaaaagtgtatcaccaccaatatggcaaaatcgagttatctactccaagtctttgcaccttt 221  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||||| || |||  |||| ||||||||||||||||||||||||||||||||||    
T  6849113 cctctgcatatcaagtgctacacttgccaatttaactttaaaa-cgtatcactactaat-cggcataatcgagttatctactccaagtctttgcaccttt 6849210  T

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Target: chr7; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 20 - 308
Target Start/End: Original strand, 6844573 - 6844858
Alignment:
Q  20 catctttcgtgttggagatgatggttatgctgagcctttttcggcatttagcagtttgaacagtttgaccattcagtattgtagagttctcgaagtacaa 119  Q
    |||||||| |||||| |||||||||| || ||| |||||||||||||||||||||||||| |||||||  |||| ||| ||||||||||| |    ||||    
T  6844573 catctttcctgttggcgatgatggttgtgttgaccctttttcggcatttagcagtttgaatagtttgattattcggtactgtagagttcttggtcaacaa 6844672  T
Q  120 aacctctgcatatcaagtgctacacttgccaatttaactttaaaagtgtatcaccaccaatatggcaaaatcgagttatctactccaagtctttgcacct 219  Q
    |||||||| |||||||||||||||||||   |||||||| || ||    | ||| |  |||||| |||||| ||||||||||||||||||||||||||||    
T  6844673 aacctctgtatatcaagtgctacacttgatgatttaactatagaaa---aacacaataaatatgacaaaattgagttatctactccaagtctttgcacct 6844769  T
Q  220 ttgtctttggttgtacaggggatattcctgatctgagactacgtgggagagagagcaatctatcttccatcaaacatgtaaatattgat 308  Q
    ||||||||| ||||   ||| ||||||||| ||||| ||||| ||||| |||||| ||||| |||||  ||||||||||||| ||||||    
T  6844770 ttgtctttgtttgtgaggggaatattcctgctctgaaactacatgggatagagagaaatctctcttctgtcaaacatgtaaagattgat 6844858  T

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Target: chr7; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 219 - 343
Target Start/End: Original strand, 6849371 - 6849495
Alignment:
Q  219 tttgtctttggttgtacaggggatattcctgatctgagactacgtgggagagagagcaatctatcttccatcaaacatgtaaatattgatctatgtatgg 318  Q
    ||||||||||||||||| |||||||||||| |||| | |||||||||||||||||||||||| |||||| |||||||||||||||||||| ||  |||||    
T  6849371 tttgtctttggttgtacgggggatattcctaatctaaaactacgtgggagagagagcaatctctcttccgtcaaacatgtaaatattgatttaaatatgg 6849470  T
Q  319 ggtgtattaatgaggatactccttt 343  Q
    ||| |||| ||| ||||||||||||    
T  6849471 ggtctattgatgcggatactccttt 6849495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 23 - 154
Target Start/End: Complemental strand, 30597863 - 30597732
Alignment:
Q  23 ctttcgtgttggagatgatggttatgctgagcctttttcggcatttagcagtttgaacagtttgaccattcagtattgtagagttctcgaagtacaaaac 122  Q
    |||| ||||||| || ||||||| ||||||||||||||||||||| | ||||||||| | |||||  |||| ||||||||  ||||| || | | ||| |    
T  30597863 cttttgtgttggtgacgatggttgtgctgagcctttttcggcattaaacagtttgaaaaatttgatgattctgtattgtaatgttcttgatgcagaaagc 30597764  T
Q  123 ctctgcatatcaagtgctacacttgccaattt 154  Q
    |||||||||||||||| ||||||| |||||||    
T  30597763 ctctgcatatcaagtgttacacttaccaattt 30597732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 192 - 307
Target Start/End: Complemental strand, 30597694 - 30597579
Alignment:
Q  192 gagttatctactccaagtctttgcacctttgtctttggttgtacaggggatattcctgatctgagactacgtgggagagagagcaatctatcttccatca 291  Q
    |||||||||||||||||||||| |||||||| ||||| ||||   | || |||||||| | ||| |||| || ||||  | | ||| || |||||  |||    
T  30597694 gagttatctactccaagtcttttcacctttgactttgtttgttatgagggtattcctgttttgaaactatgtaggagcaaaatcaacctctcttctgtca 30597595  T
Q  292 aacatgtaaatattga 307  Q
    ||||||||||||||||    
T  30597594 aacatgtaaatattga 30597579  T

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Target: scaffold0210 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 154
Target Start/End: Complemental strand, 15901 - 15863
Alignment:
Q  116 acaaaacctctgcatatcaagtgctacacttgccaattt 154  Q
    ||||||||||| |||||||||||| ||||||||||||||    
T  15901 acaaaacctctacatatcaagtgccacacttgccaattt 15863  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 157
Target Start/End: Complemental strand, 8656196 - 8656155
Alignment:
Q  116 acaaaacctctgcatatcaagtgctacacttgccaatttaac 157  Q
    |||||||||||||||||||||||| |||||  ||||||||||    
T  8656196 acaaaacctctgcatatcaagtgccacactcaccaatttaac 8656155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 156
Target Start/End: Complemental strand, 7174931 - 7174891
Alignment:
Q  116 acaaaacctctgcatatcaagtgctacacttgccaatttaa 156  Q
    ||||||| |||||||||||||||  ||||||||||||||||    
T  7174931 acaaaacatctgcatatcaagtgtcacacttgccaatttaa 7174891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 156
Target Start/End: Original strand, 52187335 - 52187416
Alignment:
Q  75 ttgaacagtttgaccattcagtattgtagagttctcgaagtacaaaacctctgcatatcaagtgctacacttgccaatttaa 156  Q
    ||||||||||||  |||| | | ||||| ||||||||| | |||||| || |||||||||||||| | ||||| ||||||||    
T  52187335 ttgaacagtttggtcattgactgttgtatagttctcgacgcacaaaaactttgcatatcaagtgccaaacttgtcaatttaa 52187416  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 156
Target Start/End: Complemental strand, 7058357 - 7058317
Alignment:
Q  116 acaaaacctctgcatatcaagtgctacacttgccaatttaa 156  Q
    ||||||||||| |||||| ||||| ||||||||||||||||    
T  7058357 acaaaacctctacatatcgagtgccacacttgccaatttaa 7058317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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