View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19580_low_2 (Length: 642)
Name: NF19580_low_2
Description: NF19580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19580_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 265 - 625
Target Start/End: Complemental strand, 46203669 - 46203309
Alignment:
| Q |
265 |
tgtatgataaagagacaaaaacaaagtacatatagagatcaggtgatcagatagtataaagtaaagtaatgaaagactagctttgaagaagtggaatttg |
364 |
Q |
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| T |
46203669 |
tgtatgataaagagacaaaaacaaagtacatatagagatcaggtgatcagatagtataaagtaaagtaatgaaagactagctttgaagaagtggaatttg |
46203570 |
T |
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| Q |
365 |
ttcttgatgatagatctcttcatcgctgaaaagatactgcaggcaccaccatcacaaccctagctagtcacgttcttaagtactttatctaattcaagaa |
464 |
Q |
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| T |
46203569 |
ttcttgatgatagatctcttcatcgctgaaaagatactgcaggcaccaccatcacaaccctagctagtcacgttcttaagtactttatctaattcaagaa |
46203470 |
T |
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| Q |
465 |
accatacgtacgtactttgaaaatagaaatatcagatcatagccacatagctagatagcagctttgttatcgtcatccaatgagcatgcctatatcacat |
564 |
Q |
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| T |
46203469 |
accatacgtacgtactttgaaaatagaaatatcagatcatagccacatagctagatagcagctttgttatcgtcatccaatgagcaggcctatatcacat |
46203370 |
T |
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| Q |
565 |
tcacatgtatagctagctagctgctactactgcacactctacgcatattctcggtcttcaa |
625 |
Q |
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| T |
46203369 |
tcacatgtatagctagctagctagtactactgcacactctacgcatattctcggtcttcaa |
46203309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 14 - 169
Target Start/End: Complemental strand, 46203845 - 46203690
Alignment:
| Q |
14 |
aatatatcatgggatgattccaaatctaccaaccatgtcaannnnnnncgttttcattagtgatgatgtatacaccaacactacataatatatgctcgta |
113 |
Q |
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| T |
46203845 |
aatatatcatgggatgattccaaatctaccaaccatgtcaatttttttcgttttcattagtgatgatgtatacaccaacactacataatatatgctcgta |
46203746 |
T |
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| Q |
114 |
tcggtgccaatttgtaccgttaataaagttgttgatgcagctagtagcagcattag |
169 |
Q |
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| T |
46203745 |
tcggtgccaatttgtaccgttaataaagttgttgatgcagctagtagcagcattag |
46203690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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