View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19580_low_21 (Length: 305)
Name: NF19580_low_21
Description: NF19580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19580_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 16 - 288
Target Start/End: Original strand, 31717028 - 31717302
Alignment:
| Q |
16 |
ataaaatataaatggatttaaatatgtaatttgattggtttaaaatagcctaataaactaagaaattatatgataatcaattaaattatgactttagtta |
115 |
Q |
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| T |
31717028 |
ataaaatataaatggatttaaatatgtaatttgattggtttaaaatagcctaataaactaagaaattatatgataatcaattaaattatgactttagtta |
31717127 |
T |
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| Q |
116 |
gtatactcaatgtataattattttacagaagcatctaatcatatattaatgttgtcacgtcaaataatgatgtgatgcatgtataaaataattgtacact |
215 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
31717128 |
gtatactcaatttataattattttacagaagcatctaatcatatattaatgttgtcacctcaaataatgatgtgatgcatgtataaaataattgtacact |
31717227 |
T |
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| Q |
216 |
aacggactatacgataattaattaaatcataaaccatggccgattatgataatgctgtgc--agagaccattaac |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
31717228 |
aacggactatacgataattaattaaatcataaaccatggccgattatgataatgctgtgcaaagagaccattaac |
31717302 |
T |
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