View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19580_low_22 (Length: 301)
Name: NF19580_low_22
Description: NF19580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19580_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 18 - 297
Target Start/End: Original strand, 2092879 - 2093158
Alignment:
| Q |
18 |
tcataaatgtgtatgtatctttcactataaacaaatacaacagtggttcagactgcatgaagagtgtttcagtggttcaactgccacaatttgacagttt |
117 |
Q |
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| T |
2092879 |
tcataaatgtgtatgtatctttcactataaataaataca-cagtggttcaaactgcatgaagagtgtttcagtggttcaactgccataatttagcaattt |
2092977 |
T |
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| Q |
118 |
cttcataaaaattggcttaacctagatttatacctagtgttttaactaaataatttctgactaaacccacacgtttgctacctaaccaattcctaatcta |
217 |
Q |
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| T |
2092978 |
cttcataaaaattggcttaacctagatttatacttagtgttttaactaaataatttctgactaaacccacacgtttgctacctaaccaattcctaatcta |
2093077 |
T |
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| Q |
218 |
atgaagggtataatagt-atttttacttatgatgtaacctatatttattcattcaacttcgtacatttattcatctcactc |
297 |
Q |
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|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
2093078 |
atgaagggcataatagtcttttttacttatgatgtaacctatatttattcattcaacttcatacatttattcatttcactc |
2093158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 27 - 162
Target Start/End: Complemental strand, 2309955 - 2309819
Alignment:
| Q |
27 |
tgtatgtatctttcactataaacaaatacaacagtggttcagactgcatgaagagtgtttcagtggttcaactgccacaatttgacagtttcttcata-a |
125 |
Q |
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||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||| | |
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| T |
2309955 |
tgtatgtatctttgactataaacaaatacaacagtgattcagactacatgaagagtgttttagtggttcaactgccacaatttggcagtttcttcataca |
2309856 |
T |
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| Q |
126 |
aaattggcttaacctagatttatacctagtgttttaa |
162 |
Q |
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||||| |||||||||||||||||| ||||| ||||| |
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| T |
2309855 |
aaattaccttaacctagatttatacttagtgctttaa |
2309819 |
T |
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