View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19580_low_3 (Length: 582)

Name: NF19580_low_3
Description: NF19580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19580_low_3
NF19580_low_3
[»] chr8 (5 HSPs)
chr8 (1-563)||(44729151-44729720)
chr8 (331-563)||(12729464-12729687)
chr8 (331-493)||(28695928-28696092)
chr8 (341-421)||(25953601-25953681)
chr8 (360-450)||(10085641-10085732)
[»] chr3 (6 HSPs)
chr3 (328-550)||(52653860-52654082)
chr3 (331-563)||(33709903-33710133)
chr3 (351-429)||(16729894-16729972)
chr3 (331-446)||(40574130-40574240)
chr3 (331-421)||(49784164-49784255)
chr3 (351-421)||(29827120-29827190)
[»] chr5 (8 HSPs)
chr5 (351-563)||(9851276-9851486)
chr5 (360-563)||(29006559-29006761)
chr5 (341-421)||(2022641-2022721)
chr5 (351-486)||(36203207-36203342)
chr5 (351-421)||(43378129-43378199)
chr5 (393-441)||(15205528-15205576)
chr5 (363-429)||(9080496-9080562)
chr5 (351-391)||(35369365-35369405)
[»] chr1 (12 HSPs)
chr1 (387-563)||(49053867-49054043)
chr1 (351-550)||(49061460-49061659)
chr1 (341-421)||(21432107-21432187)
chr1 (351-421)||(44524460-44524530)
chr1 (331-421)||(35624689-35624779)
chr1 (357-421)||(29681289-29681353)
chr1 (357-421)||(48366493-48366557)
chr1 (351-421)||(10187018-10187088)
chr1 (356-419)||(43358448-43358511)
chr1 (521-550)||(10917601-10917630)
chr1 (331-416)||(19310521-19310606)
chr1 (502-563)||(42263411-42263472)
[»] chr7 (7 HSPs)
chr7 (354-563)||(12239457-12239666)
chr7 (331-446)||(37469067-37469182)
chr7 (349-446)||(1840839-1840933)
chr7 (331-493)||(24870560-24870722)
chr7 (357-421)||(5436972-5437036)
chr7 (358-563)||(23757009-23757212)
chr7 (355-440)||(20464191-20464275)
[»] chr4 (12 HSPs)
chr4 (387-563)||(48779727-48779902)
chr4 (341-421)||(3415594-3415674)
chr4 (352-421)||(3425142-3425211)
chr4 (331-428)||(20251618-20251714)
chr4 (331-421)||(18736831-18736921)
chr4 (473-547)||(24391923-24391997)
chr4 (342-421)||(18670524-18670603)
chr4 (341-421)||(18716168-18716248)
chr4 (352-416)||(30020297-30020361)
chr4 (365-421)||(32429726-32429782)
chr4 (360-446)||(24129169-24129255)
chr4 (503-548)||(47078023-47078068)
[»] chr6 (5 HSPs)
chr6 (354-563)||(28611983-28612188)
chr6 (401-543)||(11932048-11932189)
chr6 (331-422)||(24075619-24075710)
chr6 (360-421)||(21937271-21937332)
chr6 (351-421)||(24509270-24509340)
[»] chr2 (4 HSPs)
chr2 (341-421)||(716045-716123)
chr2 (330-401)||(42779867-42779937)
chr2 (387-451)||(34680975-34681039)
chr2 (351-401)||(16272134-16272184)
[»] scaffold0007 (1 HSPs)
scaffold0007 (357-427)||(217947-218017)


Alignment Details
Target: chr8 (Bit Score: 511; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 1 - 563
Target Start/End: Complemental strand, 44729720 - 44729151
Alignment:
Q  1 aattaatactagtgtcattgaaggaagtttagttgtgatattagaaggcatactgatgtgatggctattgttagaagcgctatgaaggt---tatgtgga 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||    
T  44729720 aattaatactagtgtcattgaaggaagtttagttgtgatattagaaggcatactgatgtgatggctattgttagaagcgctatgaaggtggttatgtgga 44729621  T
Q  98 gggagaaaagctgtggggtccatatttaagagcagaattcaggggttgaaataaggacacaaatgttaacccttggctacttgatggcagatattttaac 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44729620 gggagaaaagctgtggggtccatatttaagagcagaattcaggggttgaaataaggacacaaatgttaacccttggctacttgatggcagatattttaac 44729521  T
Q  198 aatggaggaatgcagaggcagggaggtaaagcacgtggagcagattgtaacaacattcatagattggttggaagtgttaagatcggaaggaatcatgaaa 297  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  44729520 aatggatgaatgcagaggcagggaggtaaagcacgtggagcagattgtaacaacattcatagattggttggaagagttaagatcggaaggaatcatgaaa 44729421  T
Q  298 caaaatcaccaatactcatgcgacacgttgatgtgttagaatctgtgttgagagtctgctgcaataacttgatcaagaagataatgaaaatgaac----a 393  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||    |    
T  44729420 caaaatcaccaatactcatgcgacacgttgatgtgttagaatctgtgttgagagtttgctacaataacttgatcaagaagataatgaaaatgaacatgaa 44729321  T
Q  394 tgatgaagagtgcacataaattccaaagcgtgtgtgggatacactaacctttatgttcaattcaccattgcgagttatgccaaccggatgcaagagggta 493  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  44729320 tgatgaagagtgcacataaattccaaagcgtgtgtgggatacactaacctttatgttcaattcacccctgcgagttatgccaaccggatgcaagagggta 44729221  T
Q  494 ataccggcgaatcccctttaggatacattggaatccttgacgtgacttgcacattcatacctagcgtatc 563  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  44729220 ataccggcgaatcccctttaggatacattggaatccttgacgtgacttgcacattcataccaagcgtatc 44729151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 331 - 563
Target Start/End: Complemental strand, 12729687 - 12729464
Alignment:
Q  331 tgttagaatctgtgttgagagtctgctgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaagcgtgtgtgg 430  Q
    |||||||| |||||||| |  |||||||||||| |||||||||||||||         |||||||||||| ||| ||||| |||||||||| ||||||||    
T  12729687 tgttagaacctgtgttggggatctgctgcaataccttgatcaagaagat---------gaacatgatgaaaagtacacatgaattccaaagagtgtgtgg 12729597  T
Q  431 gatacactaacctttatgttcaattcaccattgcgagttatgccaaccggatgcaagagggtaataccggcgaatcccctttaggatacattggaatcct 530  Q
    || ||||||||||||| || | |||| ||    | ||||||||||||||||||||| ||||| |||||||||| ||||||| |||||||  || ||||||    
T  12729596 gacacactaacctttaggtacgattcgcctccaccagttatgccaaccggatgcaaaagggttataccggcgattccccttcaggatacgatgaaatcct 12729497  T
Q  531 tgacgtgacttgcacattcatacctagcgtatc 563  Q
    |||| ||||||||||||||| ||| ||| ||||    
T  12729496 tgacatgacttgcacattcacaccaagcatatc 12729464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 331 - 493
Target Start/End: Original strand, 28695928 - 28696092
Alignment:
Q  331 tgttagaatctgtgttgagag--tctgctgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaagcgtgtgt 428  Q
    ||||||||||||||||| | |  | || ||||||||||||| ||||||||| ||||| |||||||||||||||| ||| |||||||||||||||||||||    
T  28695928 tgttagaatctgtgttgggggggtttgttgcaataacttgaccaagaagatgatgaatatgaacatgatgaagaatgcgcataaattccaaagcgtgtgt 28696027  T
Q  429 gggatacactaacctttatgttcaattcaccattgcgagttatgccaaccggatgcaagagggta 493  Q
    |||| |||||||| |||| |||  |||| || |  | ||||||| ||||| ||||||| ||||||    
T  28696028 gggacacactaacttttaggtttgattcgccctcaccagttatgtcaaccagatgcaaaagggta 28696092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 341 - 421
Target Start/End: Complemental strand, 25953681 - 25953601
Alignment:
Q  341 tgtgttgagagtctgctgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaag 421  Q
    ||||||| | ||||| ||||||||||| | ||||||||||||||| ||||| ||||||||| ||||||||||||| |||||    
T  25953681 tgtgttgggggtctgatgcaataacttaaccaagaagataatgaagatgaatatgatgaagtgtgcacataaatttcaaag 25953601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 360 - 450
Target Start/End: Original strand, 10085641 - 10085732
Alignment:
Q  360 aataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcac--ataaattccaaagcgtgtgtgggatacactaacctttatgtt 450  Q
    |||||||||| ||| ||||||| ||  ||||||||||| ||||||||||  ||||||| ||||| |||||| ||||||| ||| |||||||||    
T  10085641 aataacttgaacaaaaagataaagatgatgaacatgataaagagtgcacaaataaatttcaaagtgtgtgt-ggatacattaaactttatgtt 10085732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 143; Significance: 8e-75; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 328 - 550
Target Start/End: Complemental strand, 52654082 - 52653860
Alignment:
Q  328 atgtgttagaatctgtgttgagagtctgctgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaagcgtgtg 427  Q
    ||||||||||| |||||||  | || ||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  52654082 atgtgttagaacctgtgtttggggtttgcggcaataacttgatcaagaagatgatgaaaatgaacatgatgaagtgtgcacataaattccaaagcgtgtg 52653983  T
Q  428 tgggatacactaacctttatgttcaattcaccattgcgagttatgccaaccggatgcaagagggtaataccggcgaatcccctttaggatacattggaat 527  Q
    ||||| ||||||||||||| ||||||||| || |  | ||||||||||||||||||||| | ||| |||||||||||||||||| |||||||| ||||||    
T  52653982 tgggacacactaacctttaggttcaattcgccctcaccagttatgccaaccggatgcaaaatggttataccggcgaatccccttcaggatacaatggaat 52653883  T
Q  528 ccttgacgtgacttgcacattca 550  Q
    |||||||||||||||||||||||    
T  52653882 ccttgacgtgacttgcacattca 52653860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 331 - 563
Target Start/End: Complemental strand, 33710133 - 33709903
Alignment:
Q  331 tgttagaatctgtgttgagagtctgctgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaagcgtgtgtgg 430  Q
    |||||||| |||||||| | ||||||||||||| ||||| |||||| || ||   || ||||||||||||| |||||| |||||||||||||||||||||    
T  33710133 tgttagaacctgtgttggg-gtctgctgcaatatcttgaccaagaaaatgatatgaa-gaacatgatgaagtgtgcac-taaattccaaagcgtgtgtgg 33710037  T
Q  431 gatacactaacctttatgttcaattcaccattgcgagttatgccaaccggatgcaagagggta-ataccggcgaatcccctttaggatacattggaatcc 529  Q
    || ||||||||||||| | || |||||||    | ||||||| ||||||||||||| |||||| |||||||| |||||||||||||||||  | ||||||    
T  33710036 gacacactaacctttaggatcgattcacctccaccagttatgtcaaccggatgcaaaagggtatataccggctaatcccctttaggatacgatagaatcc 33709937  T
Q  530 ttgacgtgacttgcacattcatacctagcgtatc 563  Q
    ||||||||||||||||||||| ||| ||||||||    
T  33709936 ttgacgtgacttgcacattcacaccaagcgtatc 33709903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 351 - 429
Target Start/End: Complemental strand, 16729972 - 16729894
Alignment:
Q  351 gtctgctgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaagcgtgtgtg 429  Q
    ||||||||||||||||||||||| ||||  ||||| ||||||||||| ||| |||||||| |||| |||||||||||||    
T  16729972 gtctgctgcaataacttgatcaataagaagatgaagatgaacatgataaagtgtgcacattaatttcaaagcgtgtgtg 16729894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 331 - 446
Target Start/End: Original strand, 40574130 - 40574240
Alignment:
Q  331 tgttagaatctgtgttgagagtctgctgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaagcgtgtgtgg 430  Q
    ||||| ||||||||||| |  ||| ||||||||||| ||| || ||||| ||||||||||||||||   |||||||||||||||||  ||| || |||||    
T  40574130 tgttacaatctgtgttggg--tcttctgcaataactcgataaaaaagatgatgaaaatgaacatga---agagtgcacataaattctgaagtgtatgtgg 40574224  T
Q  431 gatacactaaccttta 446  Q
    || |||||||||||||    
T  40574225 gacacactaaccttta 40574240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 331 - 421
Target Start/End: Original strand, 49784164 - 49784255
Alignment:
Q  331 tgttagaatctgtgttgagagtctgctgcaataacttgatcaagaagataatgaaaatgaacatgatg-aagagtgcacataaattccaaag 421  Q
    |||| |||| ||||||| | |||||||||||||||||||  |||||||| ||||| |||||  ||||| ||| |||||||||||||||||||    
T  49784164 tgttggaatttgtgttgggggtctgctgcaataacttgacgaagaagatgatgaacatgaatgtgatgaaagtgtgcacataaattccaaag 49784255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 351 - 421
Target Start/End: Original strand, 29827120 - 29827190
Alignment:
Q  351 gtctgctgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaag 421  Q
    |||||||||||||||| || |||||| || ||||| ||||  |||||||||  || |||||||||||||||    
T  29827120 gtctgctgcaataactcgaccaagaaaatgatgaagatgactatgatgaagtttgaacataaattccaaag 29827190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 97; Significance: 2e-47; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 351 - 563
Target Start/End: Original strand, 9851276 - 9851486
Alignment:
Q  351 gtctgctgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaagcgtgtgtgggatacactaacctttatgtt 450  Q
    ||||||||||||||||||||||| ||||| ||||| ||||||||||||||  |||||||||||||||||||||||||||||| |||||||| |||| |||    
T  9851276 gtctgctgcaataacttgatcaaaaagatgatgaagatgaacatgatgaattgtgcacataaattccaaagcgtgtgtgggacacactaacatttaggtt 9851375  T
Q  451 caattcaccattgcgagttatgccaaccggatgcaagagggtaataccggcgaatcccctttaggatacattggaatccttgacgtgacttgcacattca 550  Q
    |||||| ||  | | ||||| |||||||| |||||| ||||| |||||||||||||||||| | |||||  |||||| ||| | |||| |||||||||||    
T  9851376 caattctcc-ctaccagttaagccaaccgaatgcaaaagggt-ataccggcgaatccccttcaagatacgatggaatacttaatgtgatttgcacattca 9851473  T
Q  551 tacctagcgtatc 563  Q
     ||| ||||||||    
T  9851474 caccaagcgtatc 9851486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 360 - 563
Target Start/End: Complemental strand, 29006761 - 29006559
Alignment:
Q  360 aataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaagcgtgtgtgggatacactaacctttatgttcaattcacc 459  Q
    ||||| ||||| || ||||| || || ||||| ||||||||||||||||||||||| ||||||||||||| || |||||||| |||| |||| |||| ||    
T  29006761 aataatttgataaaaaagatgatcaagatgaatatgatgaagagtgcacataaatttcaaagcgtgtgtgagacacactaacttttaggttcgattcgcc 29006662  T
Q  460 attgcgagttatgccaaccggatgcaagagggtaataccggcgaatcccctttaggatacattggaatccttgacgtgacttgcacattcatacctagcg 559  Q
        | |||| |  ||||| ||||||| ||||| |||  ||||||||| ||| || ||||| ||||||||||||| |||| | |||||||| ||| ||||    
T  29006661 -ccactagttttatcaaccagatgcaaaagggttatattggcgaatcctcttcagaatacaatggaatccttgacatgacatacacattcacaccaagcg 29006563  T
Q  560 tatc 563  Q
    ||||    
T  29006562 tatc 29006559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 341 - 421
Target Start/End: Original strand, 2022641 - 2022721
Alignment:
Q  341 tgtgttgagagtctgctgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaag 421  Q
    ||||||| | ||||||||||||||||||||||||||||| ||||| ||||||||||||||  ||||||||||||| |||||    
T  2022641 tgtgttgggggtctgctgcaataacttgatcaagaagatgatgaagatgaacatgatgaaatgtgcacataaatttcaaag 2022721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 351 - 486
Target Start/End: Complemental strand, 36203342 - 36203207
Alignment:
Q  351 gtctgctgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaagcgtgtgtgggatacactaacctttatgtt 450  Q
    |||||||| |||||||| ||||||||||| ||||| |||||||| |||||  ||||||||||||| ||  |||||||||||  ||||||||||||| |||    
T  36203342 gtctgctgtaataacttcatcaagaagatgatgaagatgaacataatgaattgtgcacataaatttcatggcgtgtgtgggccacactaacctttaagtt 36203243  T
Q  451 caattcaccattgcgagttatgccaaccggatgcaa 486  Q
    | ||||  |    | |||||||||||||||||||||    
T  36203242 cgattcgtccccaccagttatgccaaccggatgcaa 36203207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 351 - 421
Target Start/End: Original strand, 43378129 - 43378199
Alignment:
Q  351 gtctgctgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaag 421  Q
    ||||||||||||||||||| || |||||| ||||| ||||| ||||||||| ||||||||||||| |||||    
T  43378129 gtctgctgcaataacttgaccatgaagatgatgaagatgaatatgatgaagtgtgcacataaatttcaaag 43378199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 393 - 441
Target Start/End: Complemental strand, 15205576 - 15205528
Alignment:
Q  393 atgatgaagagtgcacataaattccaaagcgtgtgtgggatacactaac 441  Q
    |||||||||||||| |||||||| |||||||||||||||| ||||||||    
T  15205576 atgatgaagagtgcccataaatttcaaagcgtgtgtgggacacactaac 15205528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 363 - 429
Target Start/End: Original strand, 9080496 - 9080562
Alignment:
Q  363 aacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaagcgtgtgtg 429  Q
    ||||||| ||||||||  ||||||||||||||||| || || |||||||||||  |||| |||||||    
T  9080496 aacttgaacaagaagaagatgaaaatgaacatgataaaaagggcacataaattttaaagagtgtgtg 9080562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 351 - 391
Target Start/End: Complemental strand, 35369405 - 35369365
Alignment:
Q  351 gtctgctgcaataacttgatcaagaagataatgaaaatgaa 391  Q
    |||||||||||||| |||||||| ||||||||||| |||||    
T  35369405 gtctgctgcaataatttgatcaaaaagataatgaagatgaa 35369365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 1e-42; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 387 - 563
Target Start/End: Complemental strand, 49054043 - 49053867
Alignment:
Q  387 atgaacatgatgaagagtgcacataaattccaaagcgtgtgtgggatacactaacctttatgttcaattcaccattgcgagttatgccaaccggatgcaa 486  Q
    ||||||||||||||| || |||||||||||||| |||||||||||| ||||||||||||| |||| |||| ||    | |||||| ||||| ||||||||    
T  49054043 atgaacatgatgaagtgtacacataaattccaatgcgtgtgtgggaaacactaacctttaggttcgattcgcccccaccagttataccaactggatgcaa 49053944  T
Q  487 gagggtaataccggcgaatcccctttaggatacattggaatccttgacgtgacttgcacattcatacctagcgtatc 563  Q
     ||||| |||||||||||||||||| |||||||| || |||||||||||||||||||||||||| ||| ||| ||||    
T  49053943 aagggttataccggcgaatccccttcaggatacaatgaaatccttgacgtgacttgcacattcacaccaagcatatc 49053867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 351 - 550
Target Start/End: Complemental strand, 49061659 - 49061460
Alignment:
Q  351 gtctgctgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaagcgtgtgtgggatacactaacctttatgtt 450  Q
    |||||||||||||| || | ||| ||||| | ||| ||||||||||||||| |||||||||||||| ||||||||||||||| ||||||  ||||| |||    
T  49061659 gtctgctgcaataattttaccaaaaagatgaagaagatgaacatgatgaagtgtgcacataaattctaaagcgtgtgtgggaaacactagtctttaggtt 49061560  T
Q  451 caattcaccattgcgagttatgccaaccggatgcaagagggtaataccggcgaatcccctttaggatacattggaatccttgacgtgacttgcacattca 550  Q
    | |||| ||    | ||||||||||||  ||||||| ||||| |||||| ||||||||||| || ||||| ||||||||||||||||| |||||||||||    
T  49061559 cgattcgcccccaccagttatgccaactagatgcaaaagggttataccgacgaatccccttcagaatacaatggaatccttgacgtgatttgcacattca 49061460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 341 - 421
Target Start/End: Complemental strand, 21432187 - 21432107
Alignment:
Q  341 tgtgttgagagtctgctgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaag 421  Q
    ||||||| | ||||||||||||||||||| ||||||||| ||||| ||||||||| ||||| |||||||||||||||||||    
T  21432187 tgtgttgggggtctgctgcaataacttgaccaagaagatgatgaagatgaacatgctgaagtgtgcacataaattccaaag 21432107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 351 - 421
Target Start/End: Complemental strand, 44524530 - 44524460
Alignment:
Q  351 gtctgctgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaag 421  Q
    ||||| ||||||||||||||||||||||| ||||| |||||||||||||||  ||||||||||||||||||    
T  44524530 gtctgttgcaataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattccaaag 44524460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 331 - 421
Target Start/End: Original strand, 35624689 - 35624779
Alignment:
Q  331 tgttagaatctgtgttgagagtctgctgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaag 421  Q
    ||||||||  ||||||| | ||||||||||||||||||| ||||||||| ||||| ||||| || | |||| |||||||||||||||||||    
T  35624689 tgttagaacttgtgttgggggtctgctgcaataacttgaccaagaagatgatgaagatgaatattacgaagtgtgcacataaattccaaag 35624779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 357 - 421
Target Start/End: Original strand, 29681289 - 29681353
Alignment:
Q  357 tgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaag 421  Q
    ||||||||||||| ||||||||| ||||| ||||||||||||||| ||||| |||||||||||||    
T  29681289 tgcaataacttgaccaagaagatgatgaagatgaacatgatgaagtgtgcaaataaattccaaag 29681353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 357 - 421
Target Start/End: Complemental strand, 48366557 - 48366493
Alignment:
Q  357 tgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaag 421  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||| ||||| |||||||| ||||    
T  48366557 tgcaataacttgatcaagaagatgatgaagatgaacatgatgaagtgtgcaaataaattcgaaag 48366493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 351 - 421
Target Start/End: Complemental strand, 10187088 - 10187018
Alignment:
Q  351 gtctgctgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaag 421  Q
    ||||||| ||||||||||||||||||||| || || ||||  ||||||||| ||||||||||||| |||||    
T  10187088 gtctgctacaataacttgatcaagaagatgataaatatgactatgatgaagcgtgcacataaattacaaag 10187018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 356 - 419
Target Start/End: Original strand, 43358448 - 43358511
Alignment:
Q  356 ctgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaa 419  Q
    ||||||||| |||||||||||||| ||||| ||||  ||||||||| |||||||| ||||||||    
T  43358448 ctgcaataaattgatcaagaagatgatgaagatgactatgatgaagcgtgcacatgaattccaa 43358511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 521 - 550
Target Start/End: Complemental strand, 10917630 - 10917601
Alignment:
Q  521 ttggaatccttgacgtgacttgcacattca 550  Q
    ||||||||||||||||||||||||||||||    
T  10917630 ttggaatccttgacgtgacttgcacattca 10917601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 416
Target Start/End: Original strand, 19310521 - 19310606
Alignment:
Q  331 tgttagaatctgtgttgagagtctgctgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattc 416  Q
    ||||||||  ||||||||  ||||||| ||||||||| |  |||||||| || || ||| | ||||||||| ||||||||||||||    
T  19310521 tgttagaacttgtgttgaaggtctgctacaataacttaactaagaagatgataaagatgtatatgatgaagtgtgcacataaattc 19310606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 502 - 563
Target Start/End: Original strand, 42263411 - 42263472
Alignment:
Q  502 gaatcccctttaggatacattggaatccttgacgtgacttgcacattcatacctagcgtatc 563  Q
    |||||||||| ||||||| ||  |||| ||||| ||||||||||||||||||  ||||||||    
T  42263411 gaatccccttcaggatactttaaaatctttgacatgacttgcacattcatactaagcgtatc 42263472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 2e-41; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 354 - 563
Target Start/End: Original strand, 12239457 - 12239666
Alignment:
Q  354 tgctgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaagcgtgtgtgggatacactaacctttatgttcaa 453  Q
    ||||||||||||||||| |||||||| ||||  ||||| ||||||||| ||||||||||||| |||||||||||||||| ||| ||||||||| |||| |    
T  12239457 tgctgcaataacttgattaagaagatgatgatgatgaatatgatgaagtgtgcacataaatttcaaagcgtgtgtgggacacattaacctttaggttcga 12239556  T
Q  454 ttcaccattgcgagttatg-ccaaccggatgcaagagggtaataccggcgaatcccctttaggatacattggaatccttgacgtgacttgcacattcata 552  Q
    ||| ||    | ||||||| | |||||||||||| ||||| ||  |||||||||||||| |||||||  || |||||||||||||||||||||||||| |    
T  12239557 ttcgcccccaccagttatgtcaaaccggatgcaaaagggt-atgtcggcgaatccccttcaggatacgatgaaatccttgacgtgacttgcacattcaca 12239655  T
Q  553 cctagcgtatc 563  Q
    || ||||||||    
T  12239656 ccaagcgtatc 12239666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 331 - 446
Target Start/End: Complemental strand, 37469182 - 37469067
Alignment:
Q  331 tgttagaatctgtgttgagagtctgctgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaagcgtgtgtgg 430  Q
    |||||||| |||||||| | || ||| |||||||||||||||||||||| ||||| ||||||||||| ||  ||||||||||||| ||||| ||||||||    
T  37469182 tgttagaacctgtgttgggggtttgcagcaataacttgatcaagaagatgatgaagatgaacatgattaaatgtgcacataaatttcaaagtgtgtgtgg 37469083  T
Q  431 gatacactaaccttta 446  Q
    || |||||||||||||    
T  37469082 gacacactaaccttta 37469067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 349 - 446
Target Start/End: Complemental strand, 1840933 - 1840839
Alignment:
Q  349 gagtctgctgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaagcgtgtgtgggatacactaaccttta 446  Q
    |||||||||||||||||||||||||| |||| ||||   ||||||||||||| |||| ||||||| || |||| |||||||| |||||||||||||||    
T  1840933 gagtctgctgcaataacttgatcaagtagatgatga---tgaacatgatgaaaagtggacataaaatctaaagtgtgtgtggaatacactaaccttta 1840839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 331 - 493
Target Start/End: Complemental strand, 24870722 - 24870560
Alignment:
Q  331 tgttagaatctgtgttgagagtctgctgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaagcgtgtgtgg 430  Q
    |||||||| || ||||| | || ||||||||||||||||| |||||||| ||||| ||  |||||||||| | | ||||||||||||| | | ||| |||    
T  24870722 tgttagaacctatgttgggggtttgctgcaataacttgatgaagaagatgatgaagatagacatgatgaataatacacataaattccacatcttgtatgg 24870623  T
Q  431 gatacactaacctttatgttcaattcaccattgcgagttatgccaaccggatgcaagagggta 493  Q
    || |  |||||||||| |||| |||| ||  | | ||||||||||||||||||||| ||||||    
T  24870622 gacatgctaacctttaagttcgattcgcccctaccagttatgccaaccggatgcaaaagggta 24870560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 357 - 421
Target Start/End: Complemental strand, 5437036 - 5436972
Alignment:
Q  357 tgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaag 421  Q
    ||||||||||||| ||||||||| ||||| ||||||||||||||| ||||| |||||||||||||    
T  5437036 tgcaataacttgaccaagaagatgatgaagatgaacatgatgaagtgtgcaaataaattccaaag 5436972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 358 - 563
Target Start/End: Original strand, 23757009 - 23757212
Alignment:
Q  358 gcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaagcgtgtgtgggatacactaacctttatgttcaattca 457  Q
    |||| |||||||  ||||| || ||||| ||||||||||||||||||| ||||||||||| |||  | |||| || | |||||| |||| |||| |||||    
T  23757009 gcaagaacttgactaagaaaatgatgaagatgaacatgatgaagagtgaacataaattccgaagtttatgtgtgacatactaacttttaggttcgattca 23757108  T
Q  458 ccattgcgagttatgccaaccggatgcaagagggtaataccggcgaatcccctttaggatacattggaatccttgacgtgacttgcacattcatacctag 557  Q
    ||  | | | ||| || |||| ||||||| ||||| |||| ||||||||||||| | ||||   ||| | |||||||||||| | |||||||| ||| |     
T  23757109 cc-ctaccaattaagctaaccagatgcaaaagggt-atactggcgaatccccttcaagataatatgggacccttgacgtgacattcacattcacaccaaa 23757206  T
Q  558 cgtatc 563  Q
    ||||||    
T  23757207 cgtatc 23757212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 440
Target Start/End: Complemental strand, 20464275 - 20464191
Alignment:
Q  355 gctgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaagcgtgtgtgggatacactaa 440  Q
    |||||||||||  ||| ||| |||| || ||||| ||| ||||||||| |||| ||||||||||||||| |||| ||||| |||||    
T  20464275 gctgcaataaccagattaaggagatgataaaaat-aacttgatgaagaatgcatataaattccaaagcgcgtgtaggatatactaa 20464191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 3e-40; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 387 - 563
Target Start/End: Original strand, 48779727 - 48779902
Alignment:
Q  387 atgaacatgatgaagagtgcacataaattccaaagcgtgtgtgggatacactaacctttatgttcaattcaccattgcgagttatgccaaccggatgcaa 486  Q
    ||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||| |||| ||  ||| |||||||||||  ||||||||    
T  48779727 atgaacatgatgaagtgtgcatataaatttcaaagcgtgtgtgggatacactaacctttatgttcgattcgcctctgccagttatgccaattggatgcaa 48779826  T
Q  487 gagggtaataccggcgaatcccctttaggatacattggaatccttgacgtgacttgcacattcatacctagcgtatc 563  Q
     ||||| ||| ||| |||||||||| |||||||  || |||| ||||||||||||||||||||| ||| ||| ||||    
T  48779827 aagggt-atatcggtgaatccccttcaggatactatgaaatcattgacgtgacttgcacattcacaccaagcatatc 48779902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 341 - 421
Target Start/End: Complemental strand, 3415674 - 3415594
Alignment:
Q  341 tgtgttgagagtctgctgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaag 421  Q
    ||||||| | ||||||||||||||||||| ||||||||| ||||| ||||||||||||||| |||||||||||||||||||    
T  3415674 tgtgttgggggtctgctgcaataacttgaccaagaagatgatgaagatgaacatgatgaagtgtgcacataaattccaaag 3415594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 352 - 421
Target Start/End: Complemental strand, 3425211 - 3425142
Alignment:
Q  352 tctgctgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaag 421  Q
    |||||||||||||||||| ||||||||| ||||| ||||||||||| ||| |||||||||||||||||||    
T  3425211 tctgctgcaataacttgaccaagaagatgatgaagatgaacatgataaagtgtgcacataaattccaaag 3425142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 331 - 428
Target Start/End: Complemental strand, 20251714 - 20251618
Alignment:
Q  331 tgttagaatctgtgttgagagtctgctgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaagcgtgtgt 428  Q
    ||||||||||||||||| | |||||||| ||||  ||||  |||||||| ||||| |||||||||||||||||| |||||||||| ||||||||||||    
T  20251714 tgttagaatctgtgttggg-gtctgctgtaatagtttgactaagaagatgatgaagatgaacatgatgaagagtacacataaatttcaaagcgtgtgt 20251618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 331 - 421
Target Start/End: Original strand, 18736831 - 18736921
Alignment:
Q  331 tgttagaatctgtgttgagagtctgctgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaag 421  Q
    |||| |||| ||||||| | |||||||| ||||||||| |||||||||| || || |||||| |||||||| |||||||||||||||||||    
T  18736831 tgttggaatttgtgttgggggtctgctgtaataacttggtcaagaagatgattaagatgaacttgatgaagtgtgcacataaattccaaag 18736921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 473 - 547
Target Start/End: Complemental strand, 24391997 - 24391923
Alignment:
Q  473 ccaaccggatgcaagagggtaataccggcgaatcccctttaggatacattggaatccttgacgtgacttgcacat 547  Q
    |||||||||||||| ||||| |||||||||||||||||| | |||||| |||||||||||  |||||||||||||    
T  24391997 ccaaccggatgcaaaagggttataccggcgaatccccttcaagatacaatggaatccttggtgtgacttgcacat 24391923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 342 - 421
Target Start/End: Original strand, 18670524 - 18670603
Alignment:
Q  342 gtgttgagagtctgctgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaag 421  Q
    |||||| | ||||| ||||||||||||| ||||||||| || || ||||||||||||||| ||||||||||||| |||||    
T  18670524 gtgttgggcgtctgttgcaataacttgaccaagaagatgataaagatgaacatgatgaagtgtgcacataaatttcaaag 18670603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 341 - 421
Target Start/End: Original strand, 18716168 - 18716248
Alignment:
Q  341 tgtgttgagagtctgctgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaag 421  Q
    ||||||| | |||||||| |||||||||  ||||||||| || || |||||| |||||||| ||| |||||||||||||||    
T  18716168 tgtgttgggggtctgctgtaataacttggccaagaagatgattaagatgaacttgatgaagtgtgtacataaattccaaag 18716248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 352 - 416
Target Start/End: Complemental strand, 30020361 - 30020297
Alignment:
Q  352 tctgctgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattc 416  Q
    |||||||||||||||||| ||||||||| ||||| ||||  ||||||||| ||||| ||||||||    
T  30020361 tctgctgcaataacttgaccaagaagatgatgaagatgactatgatgaagtgtgcatataaattc 30020297  T

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Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 365 - 421
Target Start/End: Complemental strand, 32429782 - 32429726
Alignment:
Q  365 cttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaag 421  Q
    ||||||||||| ||| ||||| ||||||||||||||| |||||||||||||| ||||    
T  32429782 cttgatcaagatgatgatgaagatgaacatgatgaagtgtgcacataaattctaaag 32429726  T

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Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 360 - 446
Target Start/End: Original strand, 24129169 - 24129255
Alignment:
Q  360 aataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaagcgtgtgtgggatacactaaccttta 446  Q
    ||||| ||||||||||||   ||||  ||||| |||||||| ||||||||||||||||||||| |||| |||| ||| ||| |||||    
T  24129169 aataatttgatcaagaaggcgatgatgatgaatatgatgaaaagtgcacataaattccaaagcatgtgcgggacacattaatcttta 24129255  T

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Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 503 - 548
Target Start/End: Original strand, 47078023 - 47078068
Alignment:
Q  503 aatcccctttaggatacattggaatccttgacgtgacttgcacatt 548  Q
    |||||||||||||||||  |||||||||||||||||||| ||||||    
T  47078023 aatcccctttaggataccatggaatccttgacgtgacttacacatt 47078068  T

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Target: chr6 (Bit Score: 59; Significance: 1e-24; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 354 - 563
Target Start/End: Original strand, 28611983 - 28612188
Alignment:
Q  354 tgctgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaagcgtgtgtgggatacactaacctttatgttcaa 453  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||  |||  |||||||| | ||| ||||||||| |||| |    
T  28611983 tgctgcaataacttgatcaagaagatgatgaatatgaacatgatgaagtgtgcacataaattttaaa--gtgtgtggaacaca-taacctttaggttcga 28612079  T
Q  454 ttcaccattgcgagttatgccaaccggatgcaagagggtaataccggcgaatcccctttaggatacattggaatccttgacgtgacttgcacattcatac 553  Q
    ||   |    | ||||||| |||| | ||| || | ||| ||| |||||||||||||| || ||||| ||||||||||||||||||||| ||||||| ||    
T  28612080 tttttccccaccagttatgtcaacagtatgtaaaatggt-atatcggcgaatccccttcagaatacaatggaatccttgacgtgacttgtacattcacac 28612178  T
Q  554 ctagcgtatc 563  Q
    | ||| ||||    
T  28612179 caagcatatc 28612188  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 401 - 543
Target Start/End: Complemental strand, 11932189 - 11932048
Alignment:
Q  401 gagtgcacataaattccaaagcgtgtgtgggatacactaacctttatgttcaattcaccattgcgagttatgccaaccggatgcaagagggtaataccgg 500  Q
    ||||||||||||||| |||||| ||||| ||| ||||||||||||| |||  |||| ||    | ||||||||||||||||||||| ||||| ||||| |    
T  11932189 gagtgcacataaatttcaaagcatgtgttggacacactaacctttaggtttgattcgcccccactagttatgccaaccggatgcaaaagggttataccag 11932090  T
Q  501 cgaatcccctttaggatacattggaatccttgacgtgacttgc 543  Q
    |||| |||||| |||||||  || ||||||||| |||||||||    
T  11932089 cgaa-ccccttcaggatacgatgaaatccttgatgtgacttgc 11932048  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 331 - 422
Target Start/End: Original strand, 24075619 - 24075710
Alignment:
Q  331 tgttagaatctgtgttgagagtctgctgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaagc 422  Q
    |||||||| |||||||  | |||||||||||||||||||| |||||||| || || ||||| ||||  ||| ||||| ||||||||||||||    
T  24075619 tgttagaacctgtgttaggggtctgctgcaataacttgattaagaagatgataaagatgaatatgacaaagtgtgcatataaattccaaagc 24075710  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 360 - 421
Target Start/End: Original strand, 21937271 - 21937332
Alignment:
Q  360 aataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaag 421  Q
    |||||||||| ||||||||| ||||| ||||| ||||||||| ||||||||||||| |||||    
T  21937271 aataacttgaccaagaagatgatgaagatgaatatgatgaagtgtgcacataaattacaaag 21937332  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 351 - 421
Target Start/End: Complemental strand, 24509340 - 24509270
Alignment:
Q  351 gtctgctgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaag 421  Q
    ||||||||||| ||||||| ||||||||| ||||| ||||  |||||||||  |||| ||||||| |||||    
T  24509340 gtctgctgcaaaaacttgaccaagaagatgatgaagatgagtatgatgaagtttgcaaataaatttcaaag 24509270  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 341 - 421
Target Start/End: Original strand, 716045 - 716123
Alignment:
Q  341 tgtgttgagagtctgctgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaag 421  Q
    ||||||||| ||||||||||||||||||| ||||||||| ||| ||||||| ||||||||| || ||||||||||| ||||    
T  716045 tgtgttgag-gtctgctgcaataacttgaccaagaagatgatg-aaatgaatatgatgaagcgtacacataaattctaaag 716123  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 330 - 401
Target Start/End: Original strand, 42779867 - 42779937
Alignment:
Q  330 gtgttagaatctgtgttgagagtctgctgcaataacttgatcaagaagataatgaaaatgaacatgatgaag 401  Q
    ||||| |||| ||||||| | ||||||||||||||||||| ||||||||| ||||| |||||||| ||||||    
T  42779867 gtgttggaatttgtgttggg-gtctgctgcaataacttgaccaagaagatgatgaagatgaacataatgaag 42779937  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 451
Target Start/End: Original strand, 34680975 - 34681039
Alignment:
Q  387 atgaacatgatgaagagtgcacataaattccaaagcgtgtgtgggatacactaacctttatgttc 451  Q
    |||||||||||||||| ||||||| ||||  ||||| |||||||| ||||||||| |||| ||||    
T  34680975 atgaacatgatgaagactgcacatgaatttaaaagcatgtgtggggtacactaacttttaggttc 34681039  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 351 - 401
Target Start/End: Original strand, 16272134 - 16272184
Alignment:
Q  351 gtctgctgcaataacttgatcaagaagataatgaaaatgaacatgatgaag 401  Q
    |||||||||||||||||||  |||||||| || || |||||||||||||||    
T  16272134 gtctgctgcaataacttgactaagaagatgataaagatgaacatgatgaag 16272184  T

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Target: scaffold0007 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 357 - 427
Target Start/End: Complemental strand, 218017 - 217947
Alignment:
Q  357 tgcaataacttgatcaagaagataatgaaaatgaacatgatgaagagtgcacataaattccaaagcgtgtg 427  Q
    |||||||||||||  || ||||| ||||| |||||||| ||||| |||||||||||||||||||| |||||    
T  218017 tgcaataacttgacaaaaaagatgatgaagatgaacataatgaatagtgcacataaattccaaagtgtgtg 217947  T

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