View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19580_low_34 (Length: 251)
Name: NF19580_low_34
Description: NF19580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19580_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 49645342 - 49645587
Alignment:
| Q |
1 |
atattaaaattaaaagttaaaaatttccttcgtatgttgattctattttgctgagaatcatgtaacatatacatataattaataattatttaagggaaat |
100 |
Q |
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| T |
49645342 |
atattaaaattaaaagttaaaaatttccttcgtatgttgattctattttgctgagaatcatgtaacatatacatataattaataattatttaagggaaat |
49645441 |
T |
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| Q |
101 |
aattaaagcataatgacacttatctttgtttgaaagcatagaaatttgttcatagattgatttatgtaaaattaaacatgtaggtttagaag--aaaaaa |
198 |
Q |
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| T |
49645442 |
aattaaagcataatgacacttatctttgtttgaaagcatagaaatttgttcatagattgatttatgtaaaattaaacatgtaggtttagaagaaaaaaaa |
49645541 |
T |
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| Q |
199 |
tcaatgaatgaatagatgtaacaatttaataaaactccctttgcta |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49645542 |
tcaatgaatgaatagatgtaacaatttaataaaactccctttgcta |
49645587 |
T |
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