View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19580_low_35 (Length: 250)
Name: NF19580_low_35
Description: NF19580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19580_low_35 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 9 - 250
Target Start/End: Complemental strand, 33096938 - 33096698
Alignment:
| Q |
9 |
gagatgaagaaaaaacaatgaaaccttggcataaaattaaattgatttctttaataagtgatacaattcaagaggtgataaaattttaaacgtgttatgt |
108 |
Q |
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| T |
33096938 |
gagaagaagaaaaaacaatgaaaccttggcataaaattacattgatttctttaataagtgatacaattcaagaggtgataaaattttaaatgtgttatgt |
33096839 |
T |
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| Q |
109 |
gtgtatctactagaattgttggcatgtatgccataaagtttaaaacaatatgagatacacaaaggcatgttataattaaaatgcagccagtaatatttcc |
208 |
Q |
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| T |
33096838 |
gtgtatctactagaattgttggcatgtatg-cataaagtttaaaacaatatgagatacacaaaggcatgttataattaaaatgcagccagtaatatttcc |
33096740 |
T |
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| Q |
209 |
attcccttaacactactaataaagatctcgatgtcaatattt |
250 |
Q |
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| T |
33096739 |
attcccttaacactactaataaagatctcgatgtcaatattt |
33096698 |
T |
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Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 189 - 245
Target Start/End: Complemental strand, 40743220 - 40743164
Alignment:
| Q |
189 |
atgcagccagtaatatttccattcccttaacactactaataaagatctcgatgtcaa |
245 |
Q |
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| T |
40743220 |
atgcagccagtaatatttccattcccttgacacaactaataaagatctccatgtcaa |
40743164 |
T |
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