View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19580_low_36 (Length: 250)
Name: NF19580_low_36
Description: NF19580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19580_low_36 |
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Alignment Details
Target: chr6 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 2093122 - 2093360
Alignment:
| Q |
1 |
ttatccattcaacttcgtacatttattcacttcactctacatgcatcggctatttctttcttctccaaaacaagaggtgcactctttctaggggttccaa |
100 |
Q |
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| T |
2093122 |
ttattcattcaacttcatacatttattcatttcactctacatgtatcggctatttctttcttctccaaaacaagaggtgcactctttctagaggttccaa |
2093221 |
T |
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| Q |
101 |
ttgttttgtcgagattttcttaaaagtttcactaatttagtgaaataaaggagagaacctcaaaacatttggaaccgctaacaaagagaagcaattgaag |
200 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||| || ||||| |||||||||||| |||||||| ||||||||||||| | ||||||| |
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| T |
2093222 |
ttgttttgtcgagattttcttaaaagtttcattaatttagtgaaacaagggagaaaacctcaaaacacttggaaccactaacaaagagaaacgattgaag |
2093321 |
T |
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| Q |
201 |
acacttgtggaatggaaatagtctccccatgatagtatt |
239 |
Q |
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| T |
2093322 |
acacttgcggaatggaaatagtctccatatgatagtatt |
2093360 |
T |
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