View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19580_low_37 (Length: 238)
Name: NF19580_low_37
Description: NF19580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19580_low_37 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 63 - 238
Target Start/End: Original strand, 33096398 - 33096582
Alignment:
| Q |
63 |
tatatgtggttcaatgcttaatttcttatagaatgaccaagagtccaagacatttttcattctataacagaacttgtggaacatatcagatgaaaagttg |
162 |
Q |
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| T |
33096398 |
tatatgtggttcaatgcttaatttcttatagaatgaccaagagtccaagacatttttcattctataacagaacttgtggaacatatcagatgaaaagttg |
33096497 |
T |
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| Q |
163 |
aaatttgtt---------cattttatatccaaatatactcaatttcttgctgcagaagttaacaggtcagagaatggttttcatc |
238 |
Q |
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| T |
33096498 |
aaatttgttcaaaagtaccattttatatccaaatatactcaatttcttgctgcagaagttaacaggtcagagaattgttttcatc |
33096582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 33096299 - 33096345
Alignment:
| Q |
17 |
attgtgtttgtaatgtttgcatatatcgatttacaaacccacttttt |
63 |
Q |
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| T |
33096299 |
attgtgtttgtaatgtttgcatatatcgatttacaaacccacttttt |
33096345 |
T |
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