View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19580_low_4 (Length: 536)
Name: NF19580_low_4
Description: NF19580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19580_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 20 - 298
Target Start/End: Original strand, 25614264 - 25614542
Alignment:
| Q |
20 |
acctaaggaaagtgacaaagttgttttaacgtgtatacatgaattattggtttgaattaacgttgaaacttgaaatattactacaagtagcaggatcacg |
119 |
Q |
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| T |
25614264 |
acctaaggaaagtgacaaagttgttttaacgtgtatacatgaattattggtttgaattaacgttgaaacttgaaatattactacaagtagcaggatcacg |
25614363 |
T |
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| Q |
120 |
taaccaataatttctatttttgtgcatagctttcatgcaacctatatgaccattttgagtagtgtggcagtgtcaatgattcttaattatttctgccaca |
219 |
Q |
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| T |
25614364 |
taaccaataatttctatttttgtgcatagctttcatgcaacctatatgaccattttgagtagtgtggcagtgtcaatgattcttaattatttctgccaca |
25614463 |
T |
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| Q |
220 |
agtggtccttccatctttgattttatcatttgctatttacttgtctttttgctcgatctttattactttagtggccaag |
298 |
Q |
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| T |
25614464 |
agtggtccttccatctttgattttatcatttgctatttacttgcctttttgctcgatctttattgctttagtggccaag |
25614542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 396 - 519
Target Start/End: Original strand, 25614643 - 25614766
Alignment:
| Q |
396 |
actcatttgcatcttggttttattcttaacttgttggatcagttcttctgagatctgcttggttttagttttggtttctttgatgaaacaacgattattc |
495 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
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| T |
25614643 |
actcatttgcatcttggttttattcttaacttgttggatcagttcttctgagatctacttggttttagttttggtttctttaatgaaacaacgattattc |
25614742 |
T |
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| Q |
496 |
agtgatctaaagcaagctattcct |
519 |
Q |
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| T |
25614743 |
agtgatctaaagcaagctattcct |
25614766 |
T |
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