View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19580_low_6 (Length: 439)
Name: NF19580_low_6
Description: NF19580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19580_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 10 - 422
Target Start/End: Complemental strand, 161752 - 161338
Alignment:
| Q |
10 |
gcagagacactatagtatataccagtgggatttcgaactctaaattacccacttattcactttaagggtgaatcttaacaactatacttagaccaaaata |
109 |
Q |
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| T |
161752 |
gcagagacactatagtatataccagtgggatttcgaactctaaattacccacttattcactttaagggtgaatcttaacaactatacttagaccaaaata |
161653 |
T |
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| Q |
110 |
aataaatacacataacactca--tcaatctagttatgataataatccaaaccacgaattatacattttcaagtttctctactagaagagaatcttggcaa |
207 |
Q |
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|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
161652 |
aataaatacacataacacacacatcaatctagttatgataataatccaaaccacgaattatacattttcaagtttctctactagaagagaatcttggcaa |
161553 |
T |
|
| Q |
208 |
gacgtacaaagttgaatgcagtgtaaacaagaaaagcaatcccaaccaaagtagaactagctctccaagcatctctaaaatacaccaaccataatgcagc |
307 |
Q |
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| T |
161552 |
gacgtacaaagttgaatgcagtgtaaacaagaaaagcaatcccaaccaaagtagaactagctctccaagcatctctaaaatacaccaaccataatgcagc |
161453 |
T |
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| Q |
308 |
catggtacggttccaaatattctggtaatgcttattaagctcattaataatctcatagtaacaagttgaattcaccacaacatgtttacaaagaccatta |
407 |
Q |
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| T |
161452 |
catggtacggttccaaatattctgataatgcttattaagctcattaataatctcatagtaacaagttgaattcaccacaacatgtttacaaagaccatta |
161353 |
T |
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| Q |
408 |
acaagcattgcaact |
422 |
Q |
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| T |
161352 |
acaagcattgcaact |
161338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 124 - 422
Target Start/End: Complemental strand, 153159 - 152861
Alignment:
| Q |
124 |
acactcatcaatctagttatgataataatccaaaccacgaattatacattttcaagtttctctactagaagagaatcttggcaagacgtacaaagttgaa |
223 |
Q |
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|||| ||| |||||||||||||||||||| ||||||| ||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||| |
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| T |
153159 |
acacacataaatctagttatgataataattcaaaccatgaattatacattttcaagtttgtctagtagaaaagaatcttggcaagacgtacaaagttgaa |
153060 |
T |
|
| Q |
224 |
tgcagtgtaaacaagaaaagcaatcccaaccaaagtagaactagctctccaagcatctctaaaatacaccaaccataatgcagccatggtacggttccaa |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
153059 |
tgcagtgtaaacaagaaaagcaatcccaaccaaagtagaactagctctccaagcatctctaaaatacaccaaccataatgtagtcatggtacggttccaa |
152960 |
T |
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| Q |
324 |
atattctggtaatgcttattaagctcattaataatctcatagtaacaagttgaattcaccacaacatgtttacaaagaccattaacaagcattgcaact |
422 |
Q |
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| T |
152959 |
atattctgataatggttattaagcttattaatagtatcatagtaacaagttgaattcacaacaacatgtttgcaaagaccattaacaagcattgcaact |
152861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 77
Target Start/End: Original strand, 33687468 - 33687504
Alignment:
| Q |
41 |
ttcgaactctaaattacccacttattcactttaaggg |
77 |
Q |
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||||||||||||||| ||||||||||||| ||||||| |
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| T |
33687468 |
ttcgaactctaaattccccacttattcaccttaaggg |
33687504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 77
Target Start/End: Original strand, 33704474 - 33704510
Alignment:
| Q |
41 |
ttcgaactctaaattacccacttattcactttaaggg |
77 |
Q |
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||||||||||||||| ||||||||||||| ||||||| |
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| T |
33704474 |
ttcgaactctaaattccccacttattcaccttaaggg |
33704510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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