View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19580_low_7 (Length: 437)
Name: NF19580_low_7
Description: NF19580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19580_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 395; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 14 - 421
Target Start/End: Original strand, 43003511 - 43003920
Alignment:
| Q |
14 |
atatgtcgggtgcatattccaacagaacacttccaactgtttgcagttcttgccgattgtctttatagcattgctaccaattttgacgcagtaactcaaa |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43003511 |
atatgtcgggtgcatattccaacagaacacttccaactgtttgcagttcttgccgattgtctttatagcattgctaccaattttgacgcagtaactcaaa |
43003610 |
T |
|
| Q |
114 |
tctaagaaggaaatcattgaaagttttctggttagtcgtgtaattgcataatcgttcatattgcatctgggcagtcgcagatcccggagggagccagcat |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43003611 |
tctaagaaggaaatcattgaaagttttctggttagtcgtgtaattgcataatcgttcatattgcatctgggcagtcgcagatcccggagggagccagcat |
43003710 |
T |
|
| Q |
214 |
ttttagcaatgaaagtgaaactctttctagtccggagacccgaaacgatgagttttcggagcgatccagagcttctagcaatcaacatctgaaccatccg |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43003711 |
ttttagcaatgaaagtgaaactctttctagtccggagacctgaaacgatgagttttcggagcgatccagagcttctagcaatcaacatctgaaccatccg |
43003810 |
T |
|
| Q |
314 |
ctcatttttccgatgctcgtaaatgc--tgctccagtcagtgatttctatctcttgccaacagtaaggtccataaacagcactggcccaagatttgcata |
411 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43003811 |
ctcatttttccgatgctcgtaaatgctgtgctccagtcagtgatttctatctcttgccaacagtaaggtccataaacagcactggcccaagatttgcata |
43003910 |
T |
|
| Q |
412 |
ccattgggat |
421 |
Q |
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|||||||||| |
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| T |
43003911 |
ccattgggat |
43003920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 242 - 421
Target Start/End: Complemental strand, 27071787 - 27071608
Alignment:
| Q |
242 |
agtccggagacccgaaacgatgagttttcggagcgatccagagcttctagcaatcaacatctgaaccatccgctcatttttccgatgctcgtaaatgctg |
341 |
Q |
| |
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|||| ||| ||| |||||| ||||||| |||||||||||||| ||||||| ||||| ||||||||||||||||||| || || |||| | |||| |
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| T |
27071787 |
agtctggataccagaaacgctgagtttccggagcgatccagaacttctagtaatcagcatctgaaccatccgctcaacttgtggaggctcagagtagctg |
27071688 |
T |
|
| Q |
342 |
ctccagtcagtgatttctatctcttgccaacagtaaggtccataaacagcactggcccaagatttgcataccattgggat |
421 |
Q |
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| T |
27071687 |
caccagtcagttatgtctatctcttgccaacagtaaggaccatttacagcactggcccatgatttgcagacccttgggat |
27071608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 24 - 189
Target Start/End: Complemental strand, 12961904 - 12961739
Alignment:
| Q |
24 |
tgcatattccaacagaacacttccaactgtttgcagttcttgccgattgtctttatagcattgctaccaattttgacgcagtaactcaaatctaagaagg |
123 |
Q |
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|||||||| | |||||| |||||||| |||||| ||||||| ||||||| | ||||| ||| | ||||||||||| |||||| ||||||||||||| || |
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| T |
12961904 |
tgcatattacgacagaaaacttccaaatgtttgaagttcttctcgattgtttatatagaattaccaccaattttgatgcagtatctcaaatctaagatgg |
12961805 |
T |
|
| Q |
124 |
aaatcattgaaagttttctggttagtcgtgtaattgcataatcgttcatattgcatctgggcagtc |
189 |
Q |
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|||||||||||| ||| | ||| | || | |||||||||||||||||||||||| ||||||| |
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| T |
12961804 |
aaatcattgaaatcttttggtttatttgttccactgcataatcgttcatattgcatcttggcagtc |
12961739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 53 - 141
Target Start/End: Original strand, 12967529 - 12967617
Alignment:
| Q |
53 |
tttgcagttcttgccgattgtctttatagcattgctaccaattttgacgcagtaactcaaatctaagaaggaaatcattgaaagttttc |
141 |
Q |
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|||| |||||||| ||||||| | ||||||||||| |||||| |||| || || ||||||||||||| ||||||||||||||| |||| |
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| T |
12967529 |
tttgtagttcttgtcgattgtttatatagcattgccaccaatgttgatgcggtgtctcaaatctaagatggaaatcattgaaagctttc |
12967617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 53 - 141
Target Start/End: Original strand, 12969715 - 12969803
Alignment:
| Q |
53 |
tttgcagttcttgccgattgtctttatagcattgctaccaattttgacgcagtaactcaaatctaagaaggaaatcattgaaagttttc |
141 |
Q |
| |
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|||| |||||||| ||||||| | ||||||||||| |||||| |||| || || ||||||||||||| ||||||||||||||| |||| |
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| T |
12969715 |
tttgtagttcttgtcgattgtttatatagcattgccaccaatgttgatgcggtgtctcaaatctaagatggaaatcattgaaagctttc |
12969803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 24 - 129
Target Start/End: Complemental strand, 12967428 - 12967323
Alignment:
| Q |
24 |
tgcatattccaacagaacacttccaactgtttgcagttcttgccgattgtctttatagcattgctaccaattttgacgcagtaactcaaatctaagaagg |
123 |
Q |
| |
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|||||||| | ||| || |||||||| |||||| ||||||| ||||||| | ||||| ||| | ||| ||||||| || ||| ||||||||||||| || |
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| T |
12967428 |
tgcatattacgacataaaacttccaaatgtttgaagttcttctcgattgtttatatagaattaccaccgattttgatgccgtatctcaaatctaagatgg |
12967329 |
T |
|
| Q |
124 |
aaatca |
129 |
Q |
| |
|
|||||| |
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|
| T |
12967328 |
aaatca |
12967323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 24 - 129
Target Start/End: Complemental strand, 12969614 - 12969509
Alignment:
| Q |
24 |
tgcatattccaacagaacacttccaactgtttgcagttcttgccgattgtctttatagcattgctaccaattttgacgcagtaactcaaatctaagaagg |
123 |
Q |
| |
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|||||||| | ||| || |||||||| |||||| ||||||| ||||||| | ||||| ||| | ||| ||||||| || ||| ||||||||||||| || |
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| T |
12969614 |
tgcatattacgacataaaacttccaaatgtttgaagttcttctcgattgtttatatagaattaccaccgattttgatgccgtatctcaaatctaagatgg |
12969515 |
T |
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| Q |
124 |
aaatca |
129 |
Q |
| |
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|||||| |
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|
| T |
12969514 |
aaatca |
12969509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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