View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19580_low_8 (Length: 430)
Name: NF19580_low_8
Description: NF19580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19580_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Complemental strand, 2057544 - 2057144
Alignment:
| Q |
1 |
atactcctaacttggacatgaaatcttggaattgaactttatgaaagtgatttgtaagagggtttgacaattgttgactagacttacatatgaattatgt |
100 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2057544 |
atactcctaacttggacattaaatcttggaattgaactttatgaaagtgatttgtaagagggtttgacaattgttgactagacttacatatgaattatgt |
2057445 |
T |
|
| Q |
101 |
tttgacttcacattcgtagttggatcgttggcaagttgtatggctgacttgctatcacacagagccatagatgtagacatatcaatttcaaaagctctaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2057444 |
tttgacttcacattcgtagttggatcgttggcaagttgtatggctgacttgctatcacacagagccatagatgtagacatatcaatttcaaaagctctaa |
2057345 |
T |
|
| Q |
201 |
ggagctgtttaatccataacaactcattggttacaactgctaaagcacgatactcagcctcagtcgatgaacgtgactttgttgattgtttccttgactt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2057344 |
ggagctgtttaatccataacaactcattggttacaactgctaaagcacgatactcagcct-----------cgtgactttgttgattgtttccttgactt |
2057256 |
T |
|
| Q |
301 |
ccaagtaatcaagaattctccaagatagatgcaaaaccaattggttgatcatccacatatgttgtaactcgaagtgctacaaaactattacccgagccat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2057255 |
ccaagtaatcaagaattctccaagatagatgcaaaatcaattggttgatcatccacatatgttgtaactcgaagtgctacaaaactattacccgagccat |
2057156 |
T |
|
| Q |
401 |
tggtaaataacg |
412 |
Q |
| |
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|||||||||||| |
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| T |
2057155 |
tggtaaataacg |
2057144 |
T |
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