View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19580_low_9 (Length: 428)
Name: NF19580_low_9
Description: NF19580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19580_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 386; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 17 - 414
Target Start/End: Complemental strand, 39795196 - 39794799
Alignment:
| Q |
17 |
tgaagaaagaaatttggccatggagattctctgcgtttaggtggaaacgacttgatcatcttcaaacgacattcatggatactgttgtttttaggatact |
116 |
Q |
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| T |
39795196 |
tgaagaaagaaatttggccatggagattctctgcgtttaggtggaaacgacttgatcatcttcaaacgacattcatggataccgttgtttttaggatact |
39795097 |
T |
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| Q |
117 |
ctctgttgctgaagctgttgttcttgtctccactgtttgcttcttctatctttgttgtggctgccatttctgaatgataagtaatgtcacatgcatgtat |
216 |
Q |
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| T |
39795096 |
ctctgttgctgaagctgttgttcttgtctccactgtttgcttcttctatctttgttgtggctgccatttctgaatgataagtaatgtcacatgcatgtat |
39794997 |
T |
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| Q |
217 |
ttgaatatttcattaattcattatttcttgacaagtttaacttgtttttgtgggtttctcgtaaataaataacattgtacatgtgggtacacaaagcttg |
316 |
Q |
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| T |
39794996 |
ttgaatatttcattaattcattatttcttgacaagtttaacttgtttttgtgggtttctcgtaaataaataacattgtacatgtggttacacaaagcttg |
39794897 |
T |
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| Q |
317 |
taaattttgtaatcaattgcttttcatattatttatatatgtaattggattttaactttcaagttcttactgcgattatatcattgaagctcttactg |
414 |
Q |
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| T |
39794896 |
taaattttgtaatcaattgcttttcatattatttatatatgtaattggattttaactttcaagttcttactgcgattatatcattgatgctcttactg |
39794799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 27 - 191
Target Start/End: Complemental strand, 39774204 - 39774042
Alignment:
| Q |
27 |
aatttggccatggagattctctgcgtttaggtggaaacgacttgatcatcttcaaacgacattcatggatactgttgtttttaggat-actctctgttgc |
125 |
Q |
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| T |
39774204 |
aatttggccttggagattctctgcatttaggttga---gacttgatcatattcaaacgacatttataaatactgtcatttttaggattactctttgtggc |
39774108 |
T |
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| Q |
126 |
tgaagctgttgttcttgtctccactgtttgcttcttctatctttgttgtggctgccatttctgaat |
191 |
Q |
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| T |
39774107 |
tgaagctgttgttcttgtctccactgtttgcttcttctatctttgttgtggctgccatttctgaat |
39774042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 61 - 134
Target Start/End: Complemental strand, 39791463 - 39791389
Alignment:
| Q |
61 |
aaacgacttgatcatcttcaaacga-cattcatggatactgttgtttttaggatactctctgttgctgaagctgt |
134 |
Q |
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| T |
39791463 |
aaacgacttgatcatcttcaaacaatcattcatggatactgtcgtttttagggcactctttattgctgaagctgt |
39791389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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