View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19581_high_6 (Length: 310)
Name: NF19581_high_6
Description: NF19581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19581_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 138; Significance: 4e-72; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 26596494 - 26596306
Alignment:
| Q |
1 |
tgtcttaagtataagcacttgaaacaagtgtgtttgaaaagactctgcagaatcagaacgtgtgatcaatttagtaagtataaaaatccaaaactcaaag |
100 |
Q |
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| T |
26596494 |
tgtcttaagtataagcacttgaaacaagtgtgtttgaaaagactctgcagaatcagaacgtgtgatcaatttagtaagtataaaaatccaaaactcaaag |
26596395 |
T |
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| Q |
101 |
gaattgtttagagagnnnnnnnntactgattcttggtggctttccatccatctatccaaagagatgattaatgatttttaaaatgaagaagaaaagg |
197 |
Q |
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| T |
26596394 |
gaattgtttagagag-aaaaaaatactgcttcttggtggctttccatccatctatccaaagag-------atgatttttaaaatgaagaagaaaagg |
26596306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 216 - 296
Target Start/End: Complemental strand, 26596245 - 26596165
Alignment:
| Q |
216 |
taatggattcattttttaacaaaaagatcatataattaaaattttnnnnnnntcttgatgtctttgacataccctaatatt |
296 |
Q |
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| T |
26596245 |
taatggattcattttttaacaaaaagatcatataattaaaaattttaaaaaatcttgatgtctttgacataccctaatatt |
26596165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 26611595 - 26611529
Alignment:
| Q |
7 |
aagtataagcacttgaaacaagtgtgtttgaaaagactctgcagaatcagaacgtgtgatcaattta |
73 |
Q |
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| T |
26611595 |
aagtatgagcacttgaaacaaatgtgtttgaaaagactctgcagaatcagaacgtgtgatctattta |
26611529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 50
Target Start/End: Complemental strand, 26604069 - 26604026
Alignment:
| Q |
7 |
aagtataagcacttgaaacaagtgtgtttgaaaagactctgcag |
50 |
Q |
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|||||| |||||||||||||||||||||| |||||||||||||| |
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| T |
26604069 |
aagtatgagcacttgaaacaagtgtgtttcaaaagactctgcag |
26604026 |
T |
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