View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19581_high_7 (Length: 293)
Name: NF19581_high_7
Description: NF19581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19581_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 5 - 278
Target Start/End: Original strand, 26596562 - 26596835
Alignment:
| Q |
5 |
attaacgacaataagcttctcttttcacaatggtgacaatttactgagtcatctgataatggaaaatattccacatttattttatttatttaacccttga |
104 |
Q |
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| T |
26596562 |
attaacgacaataagcttctcttttctcaatggtgacaatttactgagtcatctgataatggaaaatattccacatttattttatttatttaacccttga |
26596661 |
T |
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| Q |
105 |
aaaaatataaaaattttagactataaataaagatcaagaggaataccattacttcctaccaactaagataaataaattcatacattacagtattaccatt |
204 |
Q |
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| T |
26596662 |
aaaaatataaaaaatttagactataaataaagatcaagaggaataccattacttcctaccaactaagataaataaattcatacattacagtattaccatt |
26596761 |
T |
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| Q |
205 |
ctttttctatgctcgcatccaatttcaaaattcactctctttctttccatgctccaaattatacaagtgttctt |
278 |
Q |
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| T |
26596762 |
ctttttctatgctcgcatccaatttcaaaattcactctctttctttccatgctccaaattatacaagtgttctt |
26596835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 32 - 75
Target Start/End: Original strand, 26604266 - 26604309
Alignment:
| Q |
32 |
caatggtgacaatttactgagtcatctgataatggaaaatattc |
75 |
Q |
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| T |
26604266 |
caatggtgacaatttactgagtcatctgataatggaaaatattc |
26604309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 182
Target Start/End: Original strand, 26604367 - 26604429
Alignment:
| Q |
120 |
ttagactataaataaagatcaagaggaataccattacttcctaccaactaagataaataaatt |
182 |
Q |
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| T |
26604367 |
ttagactataaataaagaccgagaggaaaaccattacttcctacctacgaagattaacaaatt |
26604429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 164
Target Start/End: Original strand, 26611869 - 26611911
Alignment:
| Q |
122 |
agactataaataaagatcaagaggaataccattacttcctacc |
164 |
Q |
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| T |
26611869 |
agactataaataaaggccaagaggaataccattacctcctacc |
26611911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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