View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19581_high_9 (Length: 220)

Name: NF19581_high_9
Description: NF19581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19581_high_9
NF19581_high_9
[»] chr5 (4 HSPs)
chr5 (8-203)||(2325833-2326030)
chr5 (56-98)||(25038214-25038256)
chr5 (56-125)||(36415957-36416028)
chr5 (56-125)||(15290916-15290987)
[»] scaffold0001 (1 HSPs)
scaffold0001 (56-125)||(404853-404924)
[»] chr7 (5 HSPs)
chr7 (58-110)||(42640965-42641017)
chr7 (55-125)||(27075573-27075645)
chr7 (55-125)||(27202666-27202738)
chr7 (56-108)||(36920909-36920961)
chr7 (56-108)||(33212150-33212202)
[»] chr1 (3 HSPs)
chr1 (55-98)||(44671930-44671973)
chr1 (66-118)||(10302248-10302302)
chr1 (56-108)||(32811759-32811811)
[»] chr6 (2 HSPs)
chr6 (58-108)||(27102224-27102274)
chr6 (58-108)||(27144046-27144096)
[»] chr8 (5 HSPs)
chr8 (56-125)||(39153579-39153650)
chr8 (56-125)||(40719539-40719610)
chr8 (56-101)||(16808712-16808757)
chr8 (56-109)||(34494533-34494586)
chr8 (56-108)||(9048211-9048263)
[»] chr4 (5 HSPs)
chr4 (56-108)||(53356972-53357024)
chr4 (46-98)||(4489683-4489736)
chr4 (56-108)||(30890180-30890232)
chr4 (56-125)||(39880925-39880996)
chr4 (56-125)||(51540742-51540813)
[»] chr3 (1 HSPs)
chr3 (56-125)||(40159721-40159792)
[»] chr2 (2 HSPs)
chr2 (56-125)||(4723671-4723742)
chr2 (55-99)||(41868263-41868307)


Alignment Details
Target: chr5 (Bit Score: 162; Significance: 1e-86; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 8 - 203
Target Start/End: Original strand, 2325833 - 2326030
Alignment:
Q  8 catcatcatcatcttcaaacccnnnnnnncctaattatcaaaagagtatgatatttgtacaactctttggtgcaacttttatgataactttgattctc-- 105  Q
    ||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||      
T  2325833 catcatcatcatcttcaaacccacaaaaacctaattatcaaaagagtatgatatttgtacaactctttgatgcaacttttatgataactttgattctctc 2325932  T
Q  106 tctttcgattggtcacaaatccaaattgtattggctaaagattaaaacccataaaaccttaaaaaacatgcatcaaagtgtttccgaatcacaatagt 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2325933 tctttcgattggtcacaaatccaaattgtattggctaaagattaaaacccataaaaccttaaaaaacatgcatcaaagtgtttccgaatcacaatagt 2326030  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 56 - 98
Target Start/End: Complemental strand, 25038256 - 25038214
Alignment:
Q  56 tgatatttgtacaactctttggtgcaacttttatgataacttt 98  Q
    ||||||||||||||||||||||| ||||||| |||||||||||    
T  25038256 tgatatttgtacaactctttggtacaactttcatgataacttt 25038214  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 125
Target Start/End: Original strand, 36415957 - 36416028
Alignment:
Q  56 tgatatttgtacaactctttggtgcaacttttatgataactttg--attctctctttcgattggtcacaaat 125  Q
    |||||| |||||||||||||||| ||||||| |||| |||||||   |||||||||| ||||||||| ||||    
T  36415957 tgatatatgtacaactctttggtacaactttcatgacaactttggttttctctcttttgattggtcaaaaat 36416028  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 125
Target Start/End: Original strand, 15290916 - 15290987
Alignment:
Q  56 tgatatttgtacaactctttggtgcaacttttatgataactttga--ttctctctttcgattggtcacaaat 125  Q
    |||||| |||||||||||||||| |||||||||| |||| ||| |  ||||| |||| ||||||||| ||||    
T  15290916 tgatatatgtacaactctttggtacaacttttataataattttaattttctcccttttgattggtcaaaaat 15290987  T

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Target: scaffold0001 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 125
Target Start/End: Complemental strand, 404924 - 404853
Alignment:
Q  56 tgatatttgtacaactctttggtgcaacttttatgataactttgattctctct--ttcgattggtcacaaat 125  Q
    ||||||||||||||||||||||| |||||||||||| ||||||| || |||||  |||||||||||| ||||    
T  404924 tgatatttgtacaactctttggtacaacttttatgacaactttgtttttctcttcttcgattggtcataaat 404853  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 110
Target Start/End: Complemental strand, 42641017 - 42640965
Alignment:
Q  58 atatttgtacaactctttggtgcaacttttatgataactttgattctctcttt 110  Q
    |||| |||||||||||||||| ||||||||||||||||||||||| |||||||    
T  42641017 atatatgtacaactctttggtacaacttttatgataactttgattttctcttt 42640965  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 125
Target Start/End: Complemental strand, 27075645 - 27075573
Alignment:
Q  55 atgatatttgtacaactctttggtgcaacttttatgataactttg--attctctctttcgattggtcacaaat 125  Q
    ||||||| |||||||||||||||| ||||||||||||||| ||||   |||||||||| ||||||||| ||||    
T  27075645 atgatatatgtacaactctttggtacaacttttatgataattttggttttctctcttttgattggtcaaaaat 27075573  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 125
Target Start/End: Original strand, 27202666 - 27202738
Alignment:
Q  55 atgatatttgtacaactctttggtgcaacttttatgataactttg--attctctctttcgattggtcacaaat 125  Q
    ||||||| |||||||||||||||| ||||||||||||||| ||||   |||||||||| ||||||||| ||||    
T  27202666 atgatatatgtacaactctttggtacaacttttatgataattttggttttctctcttttgattggtcaaaaat 27202738  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 36920961 - 36920909
Alignment:
Q  56 tgatatttgtacaactctttggtgcaacttttatgataactttgattctctct 108  Q
    |||||| |||||||||||||||| |||||||||| | |||||||||| |||||    
T  36920961 tgatatatgtacaactctttggtacaacttttattacaactttgattttctct 36920909  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 33212202 - 33212150
Alignment:
Q  56 tgatatttgtacaactctttggtgcaacttttatgataactttgattctctct 108  Q
    |||||| |||||||||||||||| |||||| ||||| |||||| ||| |||||    
T  33212202 tgatatatgtacaactctttggtacaacttctatgacaactttaattgtctct 33212150  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 98
Target Start/End: Original strand, 44671930 - 44671973
Alignment:
Q  55 atgatatttgtacaactctttggtgcaacttttatgataacttt 98  Q
    |||||||||||||||||||| ||| |||||||||||||||||||    
T  44671930 atgatatttgtacaactcttcggtacaacttttatgataacttt 44671973  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 118
Target Start/End: Original strand, 10302248 - 10302302
Alignment:
Q  66 acaactctttggtgcaacttttatgataactttga--ttctctctttcgattggt 118  Q
    ||||||||||||| ||||||| |||||||||||||  |||||||||| |||||||    
T  10302248 acaactctttggtacaactttcatgataactttgattttctctcttttgattggt 10302302  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 32811759 - 32811811
Alignment:
Q  56 tgatatttgtacaactctttggtgcaacttttatgataactttgattctctct 108  Q
    |||||||||||||||||||| || ||||||| |||| ||||||| || |||||    
T  32811759 tgatatttgtacaactctttagtacaactttaatgacaactttggttttctct 32811811  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 27102274 - 27102224
Alignment:
Q  58 atatttgtacaactctttggtgcaacttttatgataactttgattctctct 108  Q
    ||||||||||||||||||||| ||||||| |||| |||||||||| |||||    
T  27102274 atatttgtacaactctttggtacaactttcatgacaactttgattttctct 27102224  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 27144096 - 27144046
Alignment:
Q  58 atatttgtacaactctttggtgcaacttttatgataactttgattctctct 108  Q
    ||||||||||||||||||||| ||||||| |||| |||||||||| |||||    
T  27144096 atatttgtacaactctttggtacaactttcatgacaactttgattttctct 27144046  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 125
Target Start/End: Original strand, 39153579 - 39153650
Alignment:
Q  56 tgatatttgtacaactctttggtgcaacttttatgataactttga--ttctctctttcgattggtcacaaat 125  Q
    |||||| ||||||||||||| ||  |||||| |||||||||||||  |||||||||| ||||||||| ||||    
T  39153579 tgatatatgtacaactctttagtataactttcatgataactttgattttctctcttttgattggtcaaaaat 39153650  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 125
Target Start/End: Original strand, 40719539 - 40719610
Alignment:
Q  56 tgatatttgtacaactctttggtgcaacttttatgataactttg--attctctctttcgattggtcacaaat 125  Q
    |||||| ||||||||||||| || |||||||||||| |||||||   |||||||||| ||||||||| ||||    
T  40719539 tgatatatgtacaactctttcgtacaacttttatgacaactttggttttctctcttttgattggtcaaaaat 40719610  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 56 - 101
Target Start/End: Complemental strand, 16808757 - 16808712
Alignment:
Q  56 tgatatttgtacaactctttggtgcaacttttatgataactttgat 101  Q
    |||| ||||||||| |||||||| |||||||||||| |||||||||    
T  16808757 tgatgtttgtacaattctttggttcaacttttatgacaactttgat 16808712  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 56 - 109
Target Start/End: Original strand, 34494533 - 34494586
Alignment:
Q  56 tgatatttgtacaactctttggtgcaacttttatgataactttgattctctctt 109  Q
    ||||||||||||| |||||| || ||||| |||||| |||||||||| ||||||    
T  34494533 tgatatttgtacatctctttagtacaactcttatgacaactttgattttctctt 34494586  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 9048211 - 9048263
Alignment:
Q  56 tgatatttgtacaactctttggtgcaacttttatgataactttgattctctct 108  Q
    |||||||||||||||||||| || |||| ||||||| ||||||  ||||||||    
T  9048211 tgatatttgtacaactcttttgtacaacatttatgacaactttatttctctct 9048263  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 53356972 - 53357024
Alignment:
Q  56 tgatatttgtacaactctttggtgcaacttttatgataactttgattctctct 108  Q
    |||||| |||||||||||||||| |||||| ||||| |||||||||| |||||    
T  53356972 tgatatatgtacaactctttggtacaacttctatgacaactttgattgtctct 53357024  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 4489683 - 4489736
Alignment:
Q  46 caaaagagta-tgatatttgtacaactctttggtgcaacttttatgataacttt 98  Q
    |||||||||| |||||| |||||||||||||||| ||||||| |||| ||||||    
T  4489683 caaaagagtagtgatatatgtacaactctttggtacaactttcatgacaacttt 4489736  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 30890180 - 30890232
Alignment:
Q  56 tgatatttgtacaactctttggtgcaacttttatgataactttgattctctct 108  Q
    |||||| |||||||||||||||| ||| |||||||| ||||||| || |||||    
T  30890180 tgatatatgtacaactctttggtacaatttttatgacaactttggttttctct 30890232  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 125
Target Start/End: Original strand, 39880925 - 39880996
Alignment:
Q  56 tgatatttgtacaactctttggtgcaacttttatgataactttg--attctctctttcgattggtcacaaat 125  Q
    |||||| ||||||||||||| || ||||||| |||| |||||||   |||||||||| ||||||||| ||||    
T  39880925 tgatatatgtacaactctttcgtacaactttcatgacaactttggttttctctcttttgattggtcaaaaat 39880996  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 125
Target Start/End: Original strand, 51540742 - 51540813
Alignment:
Q  56 tgatatttgtacaactctttggtgcaacttttatgataactttg--attctctctttcgattggtcacaaat 125  Q
    |||||| | |||||||||||||| |||||||||||| || ||||   |||||||||| ||||||||| ||||    
T  51540742 tgatatatatacaactctttggtacaacttttatgacaattttggttttctctcttttgattggtcaaaaat 51540813  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 125
Target Start/End: Original strand, 40159721 - 40159792
Alignment:
Q  56 tgatatttgtacaactctttggtgcaacttttatgataactttg--attctctctttcgattggtcacaaat 125  Q
    |||||| |||||||||||||||| ||||||| |||| |||||||   |||||||||| ||||||||| ||||    
T  40159721 tgatatatgtacaactctttggtacaactttcatgacaactttggttttctctcttttgattggtcaaaaat 40159792  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 125
Target Start/End: Complemental strand, 4723742 - 4723671
Alignment:
Q  56 tgatatttgtacaactctttggtgcaacttttatgataacttt--gattctctctttcgattggtcacaaat 125  Q
    |||||| |||||||||||||||| |||||||||| | ||||||    |||||||||| ||||||||| ||||    
T  4723742 tgatatatgtacaactctttggtacaacttttataacaactttagttttctctcttttgattggtcaaaaat 4723671  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 99
Target Start/End: Original strand, 41868263 - 41868307
Alignment:
Q  55 atgatatttgtacaactctttggtgcaacttttatgataactttg 99  Q
    |||||||||||||||||||||| | ||||||||| || |||||||    
T  41868263 atgatatttgtacaactctttgatacaacttttacgacaactttg 41868307  T

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