View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19581_low_1 (Length: 599)
Name: NF19581_low_1
Description: NF19581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19581_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 529; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 11 - 580
Target Start/End: Original strand, 40941992 - 40942561
Alignment:
| Q |
11 |
catcatcacatcatgtgcttaaaaatgaaactctggggacaatatattgcttcaggctattgttttgaaggtactgcttatatttacaggcacttaaaaa |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
40941992 |
catcatcacatcatgtgcttaaaaatgaaactctggggacaatatattgcttcaggctattgttttgaaggtaatgcttatatttacaggcacttaaaaa |
40942091 |
T |
|
| Q |
111 |
gtttggtgtagaaaaatttgaccctacaaatgagccctttgatccacataggcataacgcagtcttcaaagttcctgacggttccaagcccccaggcact |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40942092 |
gtttggtgtagaaaaatttgaccctacaaatgagccctttgatccacataggcataacgcagtcttcaaagttcctgacggttccaagcccccaggcact |
40942191 |
T |
|
| Q |
211 |
gttgcagctgtgctgaaggtaatttagatcattgcttgtggaaggacatgttctttttcattccaattttaaaacttgtttcaatcaataaaatcttgat |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40942192 |
gttgcagctgtgctgaaggtaatttagatcattgcttgtggaaggacatgttctttttccttccaattttaaaacttgtttcaatcaataaaatcttgat |
40942291 |
T |
|
| Q |
311 |
gtgctattttggtctatgttgcatgaacattccaaaacttatgggcatctgtcatgttcatattcaatataacatttttattcatacttctacctttttc |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40942292 |
gtgctattttggtctatgttgcatgaacattccaaaacttatgggcatctgtcatgttcatattcaatataacatttttattcatacttctacctttttc |
40942391 |
T |
|
| Q |
411 |
acattgtagctatacttttatcgtttaggaaattcatcacccatcacctccctttaaaatagtcttgcaaccttgacacccaaaaaaccacagcaaagga |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
40942392 |
acattgtagctatacttttatcgtttaggaaattcatcacccatcacctccctttaaaatagtcttgcaatcttgacacccaaaaaaccacagcaaagga |
40942491 |
T |
|
| Q |
511 |
tagcatactttgatcctcttagtgcagtttannnnnnnaatggcttgatgccctttcgatttgcagtgtg |
580 |
Q |
| |
|
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
40942492 |
tatcatactttgatcctcttagtgcagtttattttgttaatggcttgatgccctttcgatttgcaatgtg |
40942561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 94 - 231
Target Start/End: Original strand, 21507090 - 21507227
Alignment:
| Q |
94 |
ttacaggcacttaaaaagtttggtgtagaaaaatttgaccctacaaatgagccctttgatccacataggcataacgcagtcttcaaagttcctgacggtt |
193 |
Q |
| |
|
||||||| |||||||||| ||||| ||||||| ||| ||||||||||| || ||||||||| | |||||||| || ||||| || | || || | || |
|
|
| T |
21507090 |
ttacaggtacttaaaaagcacggtgttgaaaaatatgatcctacaaatgaaccatttgatccaaacaggcataatgccatcttccaaatacccgatgctt |
21507189 |
T |
|
| Q |
194 |
ccaagcccccaggcactgttgcagctgtgctgaaggta |
231 |
Q |
| |
|
||||||| ||||||||||||| || ||| || |||||| |
|
|
| T |
21507190 |
ccaagcctccaggcactgttggagttgttctcaaggta |
21507227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University