View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19581_low_11 (Length: 211)

Name: NF19581_low_11
Description: NF19581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19581_low_11
NF19581_low_11
[»] chr6 (5 HSPs)
chr6 (47-196)||(20770444-20770593)
chr6 (106-179)||(6921494-6921567)
chr6 (105-179)||(6954663-6954737)
chr6 (106-179)||(6943098-6943171)
chr6 (109-179)||(6948024-6948094)
[»] chr7 (2 HSPs)
chr7 (27-176)||(14076469-14076618)
chr7 (27-176)||(14386497-14386646)
[»] chr5 (1 HSPs)
chr5 (52-178)||(18964978-18965104)
[»] scaffold0097 (1 HSPs)
scaffold0097 (106-166)||(16529-16589)
[»] chr2 (1 HSPs)
chr2 (106-166)||(20712690-20712750)


Alignment Details
Target: chr6 (Bit Score: 146; Significance: 4e-77; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 47 - 196
Target Start/End: Original strand, 20770444 - 20770593
Alignment:
Q  47 tatttgttggttggtctgtcatcgttataattgtcctcagaataatcttataatcaagaaatttgtgatcatctcccttgatttggcgaaagagacatac 146  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  20770444 tatttgttggttggtctgtcatcgttataattgtcctcagaataatcttataatcaagcaatttgtgatcatctcccttgatttggcgaaagagacatac 20770543  T
Q  147 aaacagttgttactccctcaatgttgtgatgaatttccacttgataatca 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20770544 aaacagttgttactccctcaatgttgtgatgaatttccacttgataatca 20770593  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 179
Target Start/End: Complemental strand, 6921567 - 6921494
Alignment:
Q  106 aatttgtgatcatctcccttgatttggcgaaagagacatacaaacagttgttactccctcaatgttgtgatgaa 179  Q
    |||||||||| ||||| |||||||||| || ||||||||| | ||| ||||| ||||||| |||||||||||||    
T  6921567 aatttgtgatgatctcacttgatttggggacagagacatatacacaattgttgctccctcgatgttgtgatgaa 6921494  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 105 - 179
Target Start/End: Complemental strand, 6954737 - 6954663
Alignment:
Q  105 aaatttgtgatcatctcccttgatttggcgaaagagacatacaaacagttgttactccctcaatgttgtgatgaa 179  Q
    ||||||||||||||||| |||||| ||  || ||||||||| | ||||||||| ||||| | |||||||||||||    
T  6954737 aaatttgtgatcatctcacttgatatgaggacagagacatatacacagttgttgctcccccgatgttgtgatgaa 6954663  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 179
Target Start/End: Complemental strand, 6943171 - 6943098
Alignment:
Q  106 aatttgtgatcatctcccttgatttggcgaaagagacatacaaacagttgttactccctcaatgttgtgatgaa 179  Q
    |||| ||||| ||||| |||||||||| || ||||||||| | | | ||||| |||||||||||||||||||||    
T  6943171 aattcgtgatgatctcacttgatttggggacagagacatatacaaaattgttgctccctcaatgttgtgatgaa 6943098  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 179
Target Start/End: Complemental strand, 6948094 - 6948024
Alignment:
Q  109 ttgtgatcatctcccttgatttggcgaaagagacatacaaacagttgttactccctcaatgttgtgatgaa 179  Q
    ||||||| ||||| |||||||||| || ||||| ||| | || |||||| ||||||| |||||||||||||    
T  6948094 ttgtgatgatctcacttgatttggggacagagagatatacacggttgttgctccctcgatgttgtgatgaa 6948024  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 27 - 176
Target Start/End: Original strand, 14076469 - 14076618
Alignment:
Q  27 ggtgtatatttaagtaatagtatttgttggttggtctgtcatcgttataattgtcctcagaataatcttataatcaagaaatttgtgatcatctcccttg 126  Q
    ||||| ||||| ||||||||| |  ||||||||||| |||| |||||||  |||| |  ||||||||| |  ||  || |||||||||| ||||| ||||    
T  14076469 ggtgtgtatttgagtaatagtttaagttggttggtccgtcaccgttatacatgtcattggaataatctcacgattgagcaatttgtgattatctcacttg 14076568  T
Q  127 atttggcgaaagagacatacaaacagttgttactccctcaatgttgtgat 176  Q
    |||||| ||  |||||||| | ||| ||||||||||||| ||||||||||    
T  14076569 atttggggactgagacatatacacaattgttactccctccatgttgtgat 14076618  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 27 - 176
Target Start/End: Original strand, 14386497 - 14386646
Alignment:
Q  27 ggtgtatatttaagtaatagtatttgttggttggtctgtcatcgttataattgtcctcagaataatcttataatcaagaaatttgtgatcatctcccttg 126  Q
    ||||| ||||| ||||||||| |  ||||||||||| |||| |||||||  |||| |  ||||||||| |  ||  || |||||||||| ||||| ||||    
T  14386497 ggtgtgtatttgagtaatagtttaagttggttggtccgtcaccgttatacatgtcattggaataatctcacgattgagcaatttgtgattatctcacttg 14386596  T
Q  127 atttggcgaaagagacatacaaacagttgttactccctcaatgttgtgat 176  Q
    |||||| ||  |||||||| | ||| ||||||||||||| ||||||||||    
T  14386597 atttggggactgagacatatacacaattgttactccctccatgttgtgat 14386646  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 52 - 178
Target Start/End: Complemental strand, 18965104 - 18964978
Alignment:
Q  52 gttggttggtctgtcatcgttataattgtcctcagaataatcttataatcaagaaatttgtgatcatctcccttgatttggcgaaagagacatacaaaca 151  Q
    ||||||||||| |||| ||||||||||||| ||| || | ||||   ||  || |||||||||| ||||| |||||| ||| ||  |||||||  | |||    
T  18965104 gttggttggtccgtcaccgttataattgtcatcaaaagattctttcgattgagcaatttgtgattatctcacttgatctggggatggagacatttacaca 18965005  T
Q  152 gttgttactccctcaatgttgtgatga 178  Q
    |||||||||||||| ||||||||||||    
T  18965004 gttgttactccctccatgttgtgatga 18964978  T

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Target: scaffold0097 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 166
Target Start/End: Complemental strand, 16589 - 16529
Alignment:
Q  106 aatttgtgatcatctcccttgatttggcgaaagagacatacaaacagttgttactccctca 166  Q
    ||||||||||||||||||| ||||||| ||  |||||||||| |||  |||| ||||||||    
T  16589 aatttgtgatcatctccctcgatttggggatggagacatacacacaaatgttgctccctca 16529  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 166
Target Start/End: Complemental strand, 20712750 - 20712690
Alignment:
Q  106 aatttgtgatcatctcccttgatttggcgaaagagacatacaaacagttgttactccctca 166  Q
    ||||||||||||||||||| ||||||| ||  |||||||||| |||  |||| ||||||||    
T  20712750 aatttgtgatcatctccctcgatttggggatggagacatacacacaaatgttgctccctca 20712690  T

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