View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19581_low_2 (Length: 531)
Name: NF19581_low_2
Description: NF19581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19581_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 1 - 513
Target Start/End: Complemental strand, 42224676 - 42224164
Alignment:
| Q |
1 |
aggacaataaatgttgaagttatgaaaaaattaaggaagcgctaaatattttatcatatttaagannnnnnnnattgatttgtgcctgtaatgccatgtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
42224676 |
aggacaataaatgttgaagttatgaaaaaattaaggaagcactaaatattttatcatatttaagattttttttattgatttgtgcctgtaatgccatgtt |
42224577 |
T |
|
| Q |
101 |
ggggcaagaattttctctcnnnnnnnnctaggttaaagaagaatatggctcttgtatgctttgtgtacatttcccttgtttaattgaataattgtattgn |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42224576 |
ggggcaagaattttctctcttttttttctaggttaaagaagaatatggctcttgtatgctttgtgtacatttcccttgtttaattgaataattgtattga |
42224477 |
T |
|
| Q |
201 |
nnnnnnnnnnnnnnntccaggccaacttttattgcgatatggaagaaaggatctgtggagcaattctcaccagcaccatacctagcaacacttgttaact |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42224476 |
aaataaaaataaaaatccaggccaacttttattgcgatatggaagaaaggatctgtggagcaattctcaccagcaccatacctagcaacacttgttaact |
42224377 |
T |
|
| Q |
301 |
gcatggtatggacactgtacggtctgcctatggtgcacccggacagcgtgctcgtggtaaccatcaacggctcaggttgtgtgattgagatcatatatgt |
400 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42224376 |
gcatggtatggacactatacggtctgcctatggtgcacccggacagcgtgctcgtggtaaccatcaacggctcaggttgtgtgattgagatcatatatgt |
42224277 |
T |
|
| Q |
401 |
cacgctcttcttgatttactctgatggcaacaaaaggctcaaggtccttatgtggctagttgttgaacttgttttcatcgcagctcttacatttgtcacg |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
42224276 |
cacgctcttcttgatttactctgatggcaacaaaaggctcaaggtccttatgtggctagttgttgaactcgttttcatcgcagctcttacatttgtcacg |
42224177 |
T |
|
| Q |
501 |
ttgagccttgttc |
513 |
Q |
| |
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||||||||||||| |
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| T |
42224176 |
ttgagccttgttc |
42224164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 218 - 409
Target Start/End: Original strand, 36675385 - 36675576
Alignment:
| Q |
218 |
caggccaacttttattgcgatatggaagaaaggatctgtggagcaattctcaccagcaccatacctagcaacacttgttaactgcatggtatggacactg |
317 |
Q |
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||||||||| ||| ||| |||||| ||||||||||| ||||| |||| |||||| | |||||||||||| || | | ||||||||||| ||||| || |
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| T |
36675385 |
caggccaacatttgttgggatatgcaagaaaggatcagtggaacaatactcacccgtaccatacctagccacgttgatgaactgcatggtttggactctc |
36675484 |
T |
|
| Q |
318 |
tacggtctgcctatggtgcacccggacagcgtgctcgtggtaaccatcaacggctcaggttgtgtgattgagatcatatatgtcacgctctt |
409 |
Q |
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||||| |||| ||||||||||| |||| | || ||||| |||||||| || |||| |||||| |||||||||| ||| |||| ||||| |
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| T |
36675485 |
tacgggttgccaatggtgcaccctcacagtttccttgtggtgaccatcaatggtgcaggatgtgtggttgagatcatctatatcacactctt |
36675576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 218 - 409
Target Start/End: Original strand, 36685467 - 36685658
Alignment:
| Q |
218 |
caggccaacttttattgcgatatggaagaaaggatctgtggagcaattctcaccagcaccatacctagcaacacttgttaactgcatggtatggacactg |
317 |
Q |
| |
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||||||||| ||| ||| |||||| ||||||||||| ||||| |||| |||||| | |||||||||||| || | | ||||||||||| ||||| || |
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| T |
36685467 |
caggccaacatttgttgggatatgcaagaaaggatcagtggaacaatactcacccgtaccatacctagccacgttgatgaactgcatggtttggactctc |
36685566 |
T |
|
| Q |
318 |
tacggtctgcctatggtgcacccggacagcgtgctcgtggtaaccatcaacggctcaggttgtgtgattgagatcatatatgtcacgctctt |
409 |
Q |
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||||| |||| ||||||||||| |||| | || ||||| |||||||| || |||| |||||| |||||||||| ||| |||| ||||| |
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| T |
36685567 |
tacgggttgccaatggtgcaccctcacagtttccttgtggtgaccatcaatggtgcaggatgtgtggttgagatcatctatatcacactctt |
36685658 |
T |
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