View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19581_low_3 (Length: 525)
Name: NF19581_low_3
Description: NF19581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19581_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 448; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 24 - 508
Target Start/End: Complemental strand, 3016857 - 3016374
Alignment:
| Q |
24 |
ttatcaagcacaccttcatttggtgatcattgtaaggaccatcgggtgcagtgattcttgttaactcactcaagcaggaggcaagggcaactttgacacc |
123 |
Q |
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| T |
3016857 |
ttatcaagcacaccttcatttggtgatcattgtaaggaccatcaggtgcagtgattcttgttaactcactcaagcaggaggcaagggcaactttgacacc |
3016758 |
T |
|
| Q |
124 |
aacatctgaatgctttataagtttatcagaaatcaatgctttcaatgatggagagagtgctttttgaatggacttagaaggtgattgttcaacctttgat |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3016757 |
aacatctgaatgctttataagtttatcagaaatcaatgctttcaatgatggagagagtgctttttgaatggacttagaaggtgattgttcaacctttgat |
3016658 |
T |
|
| Q |
224 |
aagctctttccaacttgctgcagttccaagnnnnnnnntgcaatatcaagcacatgtgattaatattttggtcaaccattgttttgactcttgagaccta |
323 |
Q |
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| T |
3016657 |
aagctctttccaacttgctgcagttccaagaaaaaaa-tgcaatatcaagcacatgtgattaatattttggtcaaccattgttttgactcttgagaccta |
3016559 |
T |
|
| Q |
324 |
cttctacaacaaagtgactatccaacaaaggcagaagaaacaaagtgaaaaagcatctaggtataagcaattctttctattttttatttcataggctccc |
423 |
Q |
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| T |
3016558 |
cttctacaacaaagtgactatccaacaaaggcagaagaaacaaagtgaaaaagcatctaggtataaacaattctttctattttttatttcataggctccc |
3016459 |
T |
|
| Q |
424 |
tggaagttcgaggggtgctagacactaaatgtggatacatttactaatcagtatcacggtgttcgaggttccttaggtttctttc |
508 |
Q |
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| T |
3016458 |
tggaagttcgaggggtgctagacactaaatgtggatacatttactaatcagtatcacggtgttcgaggttccttaggtttctttc |
3016374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 34 - 253
Target Start/End: Complemental strand, 3032587 - 3032368
Alignment:
| Q |
34 |
caccttcatttggtgatcattgtaaggaccatcgggtgcagtgattcttgttaactcactcaagcaggaggcaagggcaactttgacaccaacatctgaa |
133 |
Q |
| |
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|||||||||||| ||||| |||||| |||| ||||||||||||||||||| |||||| |||||||||||||| || ||||||||| || |||||||| |
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| T |
3032587 |
caccttcatttgaccatcatcataaggagcatcaggtgcagtgattcttgttatctcactgaagcaggaggcaagagccactttgacatcagcatctgaa |
3032488 |
T |
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| Q |
134 |
tgctttataagtttatcagaaatcaatgctttcaatgatggagagagtgctttttgaatggacttagaaggtgattgttcaacctttgataagctctttc |
233 |
Q |
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||||||||||||||||||| ||| |||||||||||||||||||| ||||| ||| | || || | || |||||||||||||||| |||||| || || |
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| T |
3032487 |
tgctttataagtttatcagcaattaatgctttcaatgatggagacagtgcatttagcatagattcaggaggtgattgttcaacccttgataggcagcttt |
3032388 |
T |
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| Q |
234 |
caacttgctgcagttccaag |
253 |
Q |
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||| |||||||||||||||| |
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| T |
3032387 |
caatttgctgcagttccaag |
3032368 |
T |
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