View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19581_low_4 (Length: 440)
Name: NF19581_low_4
Description: NF19581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19581_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 10 - 421
Target Start/End: Original strand, 25123818 - 25124227
Alignment:
| Q |
10 |
aagaatatagctaccaaaatggtggtataaccaaaatggtcctgcaaatgggttttgtaacagtttattatgacaagactaaccaccccaccttttacaa |
109 |
Q |
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| T |
25123818 |
aagaaaatagctaccaaaatggtggtataaccaaaatggtcctgcaaatgggttttgtaacagtttattatgacaagactaaccaccccaccttttacaa |
25123917 |
T |
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| Q |
110 |
aaggaaagcctccttttttgcaagtggaatttaaaagcagcttgaccactttattcttatttccatcaacacttgctcctgtttataaccaaatttatat |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
25123918 |
aaggaaagcctccttttttgcaagtggaatttaaaagcagcttgaccactttattcttatttccatcaacacttgctcctgtttataaccaaatt--tat |
25124015 |
T |
|
| Q |
210 |
atatagatattcatttttggtataatgtgatgcataaacatgtaatgaaggacatataataaataacttataaggtgttgctcatggatctaggaaggg- |
308 |
Q |
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| T |
25124016 |
atatagatattcatttttggtataatgtgatgcataagcatgtaatgaaggacatataa-aaataacttataaggtgttgctcatggatctaggaaggga |
25124114 |
T |
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| Q |
309 |
ctagttaaattcccacatcgtggtgatgcacagtttaaatatttgaaagtttatgttagttttcaatatttgaatcttaaatcttcttcatacttattta |
408 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| | ||| ||||| |
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| T |
25124115 |
ctagttagattcccacatcgtggtgatgcacagtttaaatatttaaaagtttatgttagttttcaatatttgaatcttaaaccttcttaacactcattta |
25124214 |
T |
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| Q |
409 |
gaaatgtgtggat |
421 |
Q |
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||| ||||||||| |
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| T |
25124215 |
gaagtgtgtggat |
25124227 |
T |
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