View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19581_low_5 (Length: 427)
Name: NF19581_low_5
Description: NF19581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19581_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 4831036 - 4830825
Alignment:
| Q |
1 |
ccctaaactcccaatctgtgctctctaagcctttagttcttgattacttgaagcctgtaacactcaacttcaaaactaaaggtgatgtttggtttaacat |
100 |
Q |
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| T |
4831036 |
ccctaaactcccaatctgtgctctctgagcctttagttcttgattacttgaagcctataacactcaacttcaaaactaaaggtgatgtttggtttaacat |
4830937 |
T |
|
| Q |
101 |
tagtgcaacctccgattcggatgctcctcctatactcaatgcctttgagatatataagctcataaccccggttgtttcaccaactgacgatcgagatggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
4830936 |
tagtgcaacctccgattcggatgctcctcctatactcaatgcctttgagatacataagctcataacaccggttgtttcaccaacagacgatcgagatggt |
4830837 |
T |
|
| Q |
201 |
atgtacaacact |
212 |
Q |
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|||||||||||| |
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| T |
4830836 |
atgtacaacact |
4830825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 278 - 427
Target Start/End: Complemental strand, 4830759 - 4830609
Alignment:
| Q |
278 |
tgttcaatacaattacatattttttaaaaatttgggtaatttatctaaccatcaatgaaaaacattagtaaatttgtatctgaaattagtttgtgggtac |
377 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4830759 |
tgttcaatacaattacatattttttaaaaatttgggtaatttatctaaccatcaatgaaaaacattagtaaatttgtatctgaaattagtttgtgggtac |
4830660 |
T |
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| Q |
378 |
tacttggaaattctacatattataaaagttcaatc-aacatttgatttgat |
427 |
Q |
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| T |
4830659 |
tacttggaaattctacatattataaaagttcaatcaaacatttgatttgat |
4830609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 30 - 212
Target Start/End: Complemental strand, 4849576 - 4849394
Alignment:
| Q |
30 |
cctttagttcttgattacttgaagcctgtaacactcaacttcaaaactaaaggtgatgtttggtttaacattagtgcaacctccgattcggatgctcctc |
129 |
Q |
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||||||||||||||||||||||| ||||| ||||||||||||| |||| ||||| ||||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
4849576 |
cctttagttcttgattacttgaaacctgttacactcaacttcacaactcaaggtaatgtttggtttaacattagcgcaacctcggattcggatgctcctc |
4849477 |
T |
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| Q |
130 |
ctatactcaatgcctttgagatatataagctcataaccccggttgtttcaccaactgacgatcgagatggtatgtacaacact |
212 |
Q |
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|||||||||||||||| ||||| ||||||||||| || | ||| ||||||||| | || ||||||||||||||||||| |
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| T |
4849476 |
ctatactcaatgccttcgagatctataagctcatgactcaacttgattcaccaacatcccctcaagatggtatgtacaacact |
4849394 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 23 - 212
Target Start/End: Complemental strand, 4805116 - 4804927
Alignment:
| Q |
23 |
ctctaagcctttagttcttgattacttgaagcctgtaacactcaacttcaaaactaaaggtgatgtttggtttaacattagtgcaacctccgattcggat |
122 |
Q |
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|||||||||| ||||||||||||||||||||||||| || |||||| |||||| | |||||||||||| ||||||||||||||||||||| |||||| || |
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| T |
4805116 |
ctctaagcctatagttcttgattacttgaagcctgttactctcaacatcaaaattcaaggtgatgttttgtttaacattagtgcaacctcagattcgaat |
4805017 |
T |
|
| Q |
123 |
gctcctcctatactcaatgcctttgagatatataagctcataaccccggttgtttcaccaactgacgatcgagatggtatgtacaacact |
212 |
Q |
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|||||||||||||||||||| | ||||| ||||||||||| ||||| ||| ||| || || ||| || |||||||| |||||||||| |
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| T |
4805016 |
gctcctcctatactcaatgcttacgagatctataagctcattaccccacttgattcgcctacatacgctcaagatggtacgtacaacact |
4804927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 4795032 - 4794841
Alignment:
| Q |
16 |
ctgtgctctctaagcctttagttcttgattacttgaagcctgtaacactcaacttcaaaactaaaggtgatgtttggtttaacattagtgcaacctccga |
115 |
Q |
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||||||||||| |||| |||||||||||||||||||| ||| | |||||||||| ||||||| |||| ||||||||||| ||||||||||||||||| || |
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| T |
4795032 |
ctgtgctctctcagcccttagttcttgattacttgaaacctattacactcaactacaaaactcaaggggatgtttggttcaacattagtgcaacctcaga |
4794933 |
T |
|
| Q |
116 |
ttcggatgctcctcctatactcaatgcctttgagatatataagctcataaccccggttgtttcaccaactgacgatcgagatggtatgtaca |
207 |
Q |
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||| ||| ||||||| | |||||||| |||||||| ||| || ||||||||| ||| ||||||||| |||| || |||||||| ||||| |
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| T |
4794932 |
ttctgatcttcctcctgtgctcaatgcttttgagatttatcagttcataacccaacttgattcaccaacagacgctcaagatggtacgtaca |
4794841 |
T |
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