View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19581_low_6 (Length: 391)
Name: NF19581_low_6
Description: NF19581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19581_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 375; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 928102 - 928480
Alignment:
| Q |
1 |
actaaacatgatcatatctctgctttttcctttcatgaccaaatacttcctaagagttccctccttttggaaaccagctttctccaaaaccctttgagac |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
928102 |
actaaacatgatcatatctctgctttttcctttcatgaccaaatacttcctaagagttccctccttttggaaaccagctttctccaaaaccctttgagac |
928201 |
T |
|
| Q |
101 |
ccaacattttccacatcaacaagagcttcaagcctttccaagtacgaaaattcatcgaatgcaatcttaacaatttgtttcacagcacatgtgacaatcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
928202 |
ccaacattttccacatcaacaagagcttcaagcctttccaagtacgaaaattcatcgaatgcaatcttaacaatttgtttcacagcacatgtgacaatcc |
928301 |
T |
|
| Q |
201 |
ctttacaccaatatttagagcttagattatagccaagttctgcagattgtttcctgcttttatcttcaggtgtgaacaaaagaacacagccaatagcacg |
300 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
928302 |
ctttaccccaatatttagagcttagattatagccaagttctgcagattgtttcctgcttttatcttcaggtgtgaacaaaagaacacagccaatagcacg |
928401 |
T |
|
| Q |
301 |
atcattaatgcatattgctttgcaacaaagaaacttgctttctatactttctatgaagttgatgccatcttctctgctg |
379 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
928402 |
atcattaatgcatattgctttgcaacaaagaaacttgctttctatactttctatgaagttgatgccatcttctctgctg |
928480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 8 - 369
Target Start/End: Original strand, 923748 - 924115
Alignment:
| Q |
8 |
atgatcatatctctgctttttcctttcatgaccaaatacttcctaagagttccctccttttggaaaccagctttctccaaaaccctttgagacccaacat |
107 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||| |||||||||||| ||| |
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|
| T |
923748 |
atgatcatatctctactttttcctttcatgaccaaatatttcctaagaactccctctttttggaaaccagctttctccaaaactctttgagacccagcat |
923847 |
T |
|
| Q |
108 |
tttccacatcaacaagagcttcaagcctttccaagtacgaaaattcatcgaatgcaatcttaacaatttgtttcacagcacatgtgacaatccctttaca |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || || ||| |||||||| |||||| | |||||||||| |||| ||| ||| |||||||| |
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|
| T |
923848 |
tttccacatcaacaagagcttcaagcctttccaagtaagacaactcacagaatgcaaccttaaccacttgtttcacaacacaagtggcaacccctttacc |
923947 |
T |
|
| Q |
208 |
ccaatatttagagcttagattatagccaagttctgcagattgtttcctgcttttatcttcaggt------gtgaacaaaagaacacagccaatagcacga |
301 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||| ||| |||||| |||||| ||||| | | | | | |||||| ||||| |||||| |
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| T |
923948 |
ccaatatttagagcctagaacatagccaagttctgcacatttgttcctggatttatcaccaggtgaactcgaggatagagaaacacacccaattgcacga |
924047 |
T |
|
| Q |
302 |
tcattaatgcatattgctttgcaacaaagaaacttgctttctatactttctatgaagttgatgccatc |
369 |
Q |
| |
|
||||| ||||||||||||||||| || ||||||||| | | ||| |||| ||||||||||||||||| |
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|
| T |
924048 |
tcattgatgcatattgctttgcaccatagaaacttggtagcaatattttcaatgaagttgatgccatc |
924115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 11 - 379
Target Start/End: Original strand, 939031 - 939405
Alignment:
| Q |
11 |
atcatatctctgctttttcctttcatgaccaaatacttcctaagagttccctccttttggaaaccagctttctccaaaaccctttgagacccaacatttt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
939031 |
atcatatctctgctttttcctttcatgaccaaatacttcccaagagttccctccttttggaaaccagctttctccaaaaccctttgagatccaacatttt |
939130 |
T |
|
| Q |
111 |
ccacatcaacaagagcttcaagcctttccaagtacgaaaattcatcgaatgcaatcttaacaatttgtttcacagcacatgtgacaatccctttacacca |
210 |
Q |
| |
|
|||||||||||| |||||||| |||||||||| || || ||| |||||||| |||||| | |||||||||| || | ||| | || ||||||| ||| |
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|
| T |
939131 |
ccacatcaacaaaagcttcaactctttccaagtgtgacaactcactgaatgcaaccttaactacttgtttcacaacatacgtggctattcctttacccca |
939230 |
T |
|
| Q |
211 |
atatttagagcttagattatagccaagttctgcagattgtttcctgcttttatcttcaggtg----tga--acaaaagaacacagccaatagcacgatca |
304 |
Q |
| |
|
||||||||| |||| |||| |||||||||||| || |||||||||||||| | ||||| ||| || | ||||| |||||||||||||| |
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|
| T |
939231 |
gtatttagaggctagaacataggcaagttctgcagttttgttcctgcttttatcatgaggtgatcttgatttcagagaaacacggccaatagcacgattg |
939330 |
T |
|
| Q |
305 |
ttaatgcatattgctttgcaacaaagaaacttgctttctatactttctatgaagttgatgccatcttctctgctg |
379 |
Q |
| |
|
|||| ||||||||||||||| || ||||||||| || |||| |||| |||||| ||||||| | |||| ||||| |
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|
| T |
939331 |
ttaaggcatattgctttgcaccatagaaacttgtttggtatattttcaatgaagctgatgccttgttctttgctg |
939405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 5 - 220
Target Start/End: Original strand, 935236 - 935451
Alignment:
| Q |
5 |
aacatgatcatatctctgctttttcctttcatgaccaaatacttcctaagagttccctccttttggaaaccagctttctccaaaaccctttgagacccaa |
104 |
Q |
| |
|
||||||||||||||||||||||||||||| | || | ||||||||||||| ||||| ||||| |||||| ||||||| | || |||| ||||||| |
|
|
| T |
935236 |
aacatgatcatatctctgctttttcctttaaagaatacatacttcctaagaagcccctctttttgaaaaccaactttctcaagtactttttgcgacccaa |
935335 |
T |
|
| Q |
105 |
cattttccacatcaacaagagcttcaagcctttccaagtacgaaaattcatcgaatgcaatcttaacaatttgtttcacagcacatgtgacaatcccttt |
204 |
Q |
| |
|
|||| |||| |||||||||||||| ||||||||||||| | ||||||| |||||||| |||||| ||||||||||||||||||||| |||||||||| |
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| T |
935336 |
cattatccatatcaacaagagcttgaagcctttccaaggattgaaattcactgaatgcaaccttaaccatttgtttcacagcacatgtggcaatcccttt |
935435 |
T |
|
| Q |
205 |
acaccaatatttagag |
220 |
Q |
| |
|
|| ||||||||||||| |
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|
| T |
935436 |
accccaatatttagag |
935451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 5 - 220
Target Start/End: Original strand, 925774 - 925995
Alignment:
| Q |
5 |
aacatgatcatatctctgctttttcctttcatgaccaaatacttcctaagagttccctccttttggaaaccagctttctccaaaaccctttgagacccaa |
104 |
Q |
| |
|
||||||||||||||||||||||||||||| | || | |||||| |||||| |||||| ||||| |||||| |||| || | || ||||| ||||||| |
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|
| T |
925774 |
aacatgatcatatctctgctttttcctttaaagaatacatactttctaagaactccctctttttgaaaaccaactttttcaagtactctttgtgacccaa |
925873 |
T |
|
| Q |
105 |
cattttccacatcaacaagagcttcaagcctttccaagtacgaaaattcatcgaatgc------aatcttaacaatttgtttcacagcacatgtgacaat |
198 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| || ||||||||| |||||| || | |||| ||||||||||||||||| ||| |||| |
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|
| T |
925874 |
cattatccacatcaacaagagcttcaagcctttccaaatatgaaaattcactgaatgcaaatgtaaccataaccatttgtttcacagcacacgtggcaat |
925973 |
T |
|
| Q |
199 |
ccctttacaccaatatttagag |
220 |
Q |
| |
|
|||||||| ||| ||||||||| |
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|
| T |
925974 |
ccctttaccccagtatttagag |
925995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 21 - 346
Target Start/End: Original strand, 940075 - 940404
Alignment:
| Q |
21 |
tgctttttcctttcatgaccaaatacttcctaagagttccctccttttggaaaccagctttctccaaaaccctttgagacccaacattttccacatcaac |
120 |
Q |
| |
|
||||||| ||||||||| || |||||| || || ||| ||||||||||||||||||||||||| || || |||||||||| ||||||||||| | |
|
|
| T |
940075 |
tgcttttccctttcatgttcagatactttctgagtactccttccttttggaaaccagctttctccagcactctcagagacccaacgttttccacatctaa |
940174 |
T |
|
| Q |
121 |
aagagcttcaagcctttccaagtacgaaaattcatcgaatgcaatcttaacaatttgtttcacagcacatgtgacaatccctttaca-ccaatatttaga |
219 |
Q |
| |
|
||| |||||||||||||| || | ||| ||| |||||||| |||||| | ||||||||||||||||||| |||||||||||| |||||||||| | |
|
|
| T |
940175 |
taga--ttcaagcctttccatgtgtggaaactcactgaatgcaaccttaactacttgtttcacagcacatgtggaaatccctttacacccaatatttata |
940272 |
T |
|
| Q |
220 |
gcttagattatagccaagttctgcagattgtttcctgcttttatcttcaggt------gtgaacaaaagaacacagccaatagcacgatcattaatgcat |
313 |
Q |
| |
|
|| |||| ||||||||||||| || ||| ||||||| || ||| | |||| | ||||||| ||| || || |||| ||||||||| | |||| |
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|
| T |
940273 |
gcctagaacatagccaagttctacacatttgttcctgcattcatcgt-aggtaatctcgaaaacaaaataactcacccgatagtacgatcattgaggcat |
940371 |
T |
|
| Q |
314 |
attgctttgcaacaaagaaacttgctttctata |
346 |
Q |
| |
|
|||| ||||||||| ||| |||||||||||||| |
|
|
| T |
940372 |
attgttttgcaacatagatacttgctttctata |
940404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 59 - 257
Target Start/End: Original strand, 46648079 - 46648277
Alignment:
| Q |
59 |
ccctccttttggaaaccagctttctccaaaaccctttgagacccaacattttccacatcaacaagagcttcaagcctttccaagtacgaaaattcatcga |
158 |
Q |
| |
|
|||||| |||| |||||||| |||||||| || || ||||| | | ||||||||||||||| |||||||||||||||||||||| | ||| || | | |
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|
| T |
46648079 |
ccctccctttgaaaaccagccttctccaatactctctgagaagccatattttccacatcaacttgagcttcaagcctttccaagtatggaaactccttaa |
46648178 |
T |
|
| Q |
159 |
atgcaatcttaacaatttgtttcacagcacatgtgacaatccctttacaccaatatttagagcttagattatagccaagttctgcagattgtttcctgc |
257 |
Q |
| |
|
||||| | ||| | |||||| ||| || |||| |||||||||| | |||||| || ||||| | | |||||||||||| ||||||| ||||||| |
|
|
| T |
46648179 |
atgcagcttcaaccacttgtttgacaacaagtgtggcaatccctttgccccaatacttggagctcatagcatagccaagttcagcagatttgttcctgc |
46648277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 144
Target Start/End: Original strand, 46656419 - 46656492
Alignment:
| Q |
71 |
aaaccagctttctccaaaaccctttgagacccaacattttccacatcaacaagagcttcaagcctttccaagta |
144 |
Q |
| |
|
|||||||| |||||||| ||||||||||| | ||||||||||||||||| |||| |||||||| |||||||| |
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|
| T |
46656419 |
aaaccagccttctccaacaccctttgagaagccacattttccacatcaactcgagcctcaagcctctccaagta |
46656492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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