View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19582_high_15 (Length: 335)

Name: NF19582_high_15
Description: NF19582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19582_high_15
NF19582_high_15
[»] chr4 (16 HSPs)
chr4 (10-335)||(2525508-2525837)
chr4 (17-332)||(5035378-5035695)
chr4 (111-335)||(2534066-2534294)
chr4 (23-335)||(2490881-2491195)
chr4 (24-333)||(2486062-2486373)
chr4 (44-265)||(2519056-2519279)
chr4 (28-100)||(2536575-2536647)
chr4 (23-174)||(2467446-2467597)
chr4 (220-335)||(2467298-2467413)
chr4 (294-335)||(2361217-2361258)
chr4 (290-331)||(2381641-2381682)
chr4 (290-331)||(2391269-2391310)
chr4 (23-97)||(5106306-5106380)
chr4 (294-335)||(2621417-2621458)
chr4 (283-334)||(2393836-2393888)
chr4 (299-335)||(12124598-12124634)
[»] chr2 (1 HSPs)
chr2 (31-75)||(44575183-44575227)


Alignment Details
Target: chr4 (Bit Score: 156; Significance: 7e-83; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 10 - 335
Target Start/End: Complemental strand, 2525837 - 2525508
Alignment:
Q  10 catcatcaacagtagtttcaggtctctctccctcgtttcaaaacagtttctgtccatcaccaatcgccttcgattcttggtcaaaatctccaaagctaca 109  Q
    ||||| |||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||  | |||||||||||||||| ||||||||| || ||     
T  2525837 catcaccaacggtagtttcagatctctctccctcgtctcaaaacagtttctgtccatcaccaacagtcttcgattcttggtcacaatctccaatgcaact 2525738  T
Q  110 ctccctttccttaatcgtctctttgaaaggttccctaatattacatcacttaatatcactctctctc-cttaa---gggggaccgagaagccgacctcgg 205  Q
     ||||||| ||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||| ||  |   ||||| ||||||||| |||||| |    
T  2525737 atcccttttcttaatcgtctctttgaaaggttccctaacattgcatcactcaatatcactctctctctctcgatgcgggggcccgagaagctgacctcag 2525638  T
Q  206 cgagtttctagcccaaatctctacttcccctttagacctcaaatcactcactctctaccaccctgacagtgtgcctgaaaatgagttccgagctttgtcc 305  Q
     |||||||||  ||||||||| |||| |||||||||||||||||| |||||||||||||||||   ||  || ||| |||||||||| || | |||||||    
T  2525637 tgagtttctaaaccaaatctccactttccctttagacctcaaatcgctcactctctaccacccccccaaggttcctcaaaatgagttgcgtgttttgtcc 2525538  T
Q  306 aagaagatgaaaaatttgacatctctcact 335  Q
    ||||| ||||||||||||||||||||||||    
T  2525537 aagaaaatgaaaaatttgacatctctcact 2525508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 17 - 332
Target Start/End: Complemental strand, 5035695 - 5035378
Alignment:
Q  17 aacagtagtttcaggtctctctccctcgtttcaaaacagtttctgtccatcaccaatcgccttcgattcttggtcaaaatctccaaagctacactccctt 116  Q
    |||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||  | || ||| ||||||    
T  5035695 aacagtagtttcaggtctctttccttcgtttcaaaacagtttctctccatcaccaaccgtcttcgattcttggtcaaaatctctgaggcaacaatccctt 5035596  T
Q  117 tccttaatcgtctctttgaaaggttccctaatattacatcacttaatatcactctctctccttaag--ggggaccgagaagccgacctcggcgagtttct 214  Q
    |||||| |||||||||||||||||||||||||||||||||||| |||||||||||| || |  | |   ||  |||||||||  ||||||||||||||||    
T  5035595 tccttagtcgtctctttgaaaggttccctaatattacatcactcaatatcactctcacttccaatgcctggtcccgagaagctcacctcggcgagtttct 5035496  T
Q  215 agcccaaatctctacttcccctttagacctcaaatcactcactctctaccaccctgacagtgtgcctgaaaatgagttccgagctttgtccaagaagatg 314  Q
    |||  |||||||  ||||||||||| |||||||||| |||||||| |||||| ||| ||| || |||||||||||||| |||||||||||| ||||||||    
T  5035495 agcgaaaatctccgcttcccctttaaacctcaaatcgctcactctttaccacgctgtcagggttcctgaaaatgagttgcgagctttgtccgagaagatg 5035396  T
Q  315 aaaaatttgacatctctc 332  Q
    |||| ||| || ||||||    
T  5035395 aaaagtttaacgtctctc 5035378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 111 - 335
Target Start/End: Complemental strand, 2534294 - 2534066
Alignment:
Q  111 tccctttccttaatcgtctctttgaaaggttccctaatattacatcacttaatatcactctctctccttaagggg---gaccgagaagccgacctc-ggc 206  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||| |  |  | ||   | ||| |||||||||||| |||    
T  2534294 tccctttccttaaccgcctctttgaaaggttccctaatattacatcactcaatatcactctctcccgatgggtggtttgtccgtgaagccgacctctggc 2534195  T
Q  207 gagtttctagcccaaatctctacttcccctttagacctcaaatcactcactctctaccaccctgacagtgtgcctgaaaatgagttccgagctttgtcca 306  Q
    |||||||||||| || ||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  2534194 gagtttctagccgaactctctacttccactttagacctcaaatcgctcactctctaccaccctgacagtgttcctgaaaatgagttccgagctttgtcca 2534095  T
Q  307 agaagatgaaaaatttgacatctctcact 335  Q
    |||||||||||||||| ||||||||||||    
T  2534094 agaagatgaaaaatttaacatctctcact 2534066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 23 - 335
Target Start/End: Complemental strand, 2491195 - 2490881
Alignment:
Q  23 agtttcaggtctctctccctcgtttcaaaacagtttctgtccatcaccaatcgccttcgattcttggtcaaaatctccaaagctacactccctttcctta 122  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||| || || || ||||| | ||||| ||||||| | || ||| ||||||||||||    
T  2491195 agtttcaggtctctctcactcgtctcaaaacagtttctgtccatcacaaaccgtctccgattttcggtcacaatctccgatgcaacaatccctttcctta 2491096  T
Q  123 atcgtctctttgaaaggttccctaatattacatcacttaatatcactctctct--ccttaagggggaccgagaagccgacctcggcgagtttctagccca 220  Q
    ||||||||||||||||||||||||| ||||||||| | |||||||| ||||||  ||   |  || ||| |||||  |||||| ||||| |||| |  ||    
T  2491095 atcgtctctttgaaaggttccctaacattacatcaatcaatatcaccctctcttcccgatacaggaacctagaagttgacctcagcgagcttcttggaca 2490996  T
Q  221 aatctctacttcccctttagacctcaaatcactcactctctaccaccctgacagtgtgcctgaaaatgagttccgagctttgtccaagaagatgaaaaat 320  Q
    |||||| |||| |||||| ||||||||||| ||| |||||||| | ||   ||| || || | |||||| || ||||||||||||  || ||||||||||    
T  2490995 aatctccactttccctttggacctcaaatcgctcgctctctacgagccaatcagggttcccgcaaatgaattgcgagctttgtccgggacgatgaaaaat 2490896  T
Q  321 ttgacatctctcact 335  Q
    |||||||||||||||    
T  2490895 ttgacatctctcact 2490881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 24 - 333
Target Start/End: Complemental strand, 2486373 - 2486062
Alignment:
Q  24 gtttcaggtctctctccctcgtttcaaaacagtttctgtccatcaccaatcgccttcgattcttggtcaaaatctccaaagctacactccctttccttaa 123  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||| || || ||||||| ||||| ||||||| |    ||| ||||||||||| |    
T  2486373 gttttaggtctctctccctcgtctcaaaacagtttctgtccatcaccaaccgtctccgattctcggtcacaatctccgagaaaacaatccctttccttca 2486274  T
Q  124 tcgtctctttgaaaggttccctaatattacatcacttaatatcactctctctccttaag--ggggaccgagaagccgacctcggcgagtttctagcccaa 221  Q
    |||||||||| |  ||||||||||| ||||||| |  ||||||||||||||| |  |||   || || |||||   |||||||||||| ||||  | ||     
T  2486273 tcgtctcttttatgggttccctaatgttacatcccacaatatcactctctcttcccaagacaggaacagagaaagtgacctcggcgagcttcttacacat 2486174  T
Q  222 atctctacttcccctttagacctcaaatcactcactctctaccaccctgacagtgtgcctgaaaatgagttccgagctttgtccaagaagatgaaaaatt 321  Q
    ||||| |||| |||||| |||||||||||||||||||||||| | ||   |||  | |||| |||||   | |||||||||||||| |||||||||||||    
T  2486173 atctccactttccctttggacctcaaatcactcactctctacgagcccatcaggcttcctgcaaatgctctgcgagctttgtccaaaaagatgaaaaatt 2486074  T
Q  322 tgacatctctca 333  Q
    ||||||||||||    
T  2486073 tgacatctctca 2486062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 44 - 265
Target Start/End: Complemental strand, 2519279 - 2519056
Alignment:
Q  44 gtttcaaaacagtttctgtccatcaccaatcgccttcgattcttggtcaaaatctccaaagctacactccctttccttaatcgtctctttgaaaggttcc 143  Q
    ||||||||||||||||||||||||||||| ||  |||||| ||  |||| ||||||  |    ||| ||||||||||| ||||||||||||| |||||||    
T  2519279 gtttcaaaacagtttctgtccatcaccaaccgttttcgatcctcagtcacaatctcagatcaaacaatccctttccttcatcgtctctttgataggttcc 2519180  T
Q  144 ctaatattacatcacttaatatcactctctctccttaag--ggggaccgagaagccgacctcggcgagtttctagcccaaatctctacttcccctttaga 241  Q
    | ||  |||||||||| || |||||||||||| |  |||   ||  |||||||| | ||||| ||||| ||||| || |||| |  |||| |||||||||    
T  2519179 ccaacgttacatcactcaacatcactctctcttcccaagacaggctccgagaagacaacctcagcgagcttctaaccaaaatatgcactttccctttaga 2519080  T
Q  242 cctcaaatcactcactctctacca 265  Q
    ||||| ||| ||||||||||||||    
T  2519079 cctcatatcgctcactctctacca 2519056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 28 - 100
Target Start/End: Complemental strand, 2536647 - 2536575
Alignment:
Q  28 caggtctctctccctcgtttcaaaacagtttctgtccatcaccaatcgccttcgattcttggtcaaaatctcc 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||| |  ||||||||||||||||||||||||    
T  2536647 caggtctctctccctcatttcaaaacagtttctgtccatcaccaaccttcttcgattcttggtcaaaatctcc 2536575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 23 - 174
Target Start/End: Complemental strand, 2467597 - 2467446
Alignment:
Q  23 agtttcaggtctctctccctcgtttcaaaacagtttctgtccatcaccaatcgccttcgattcttggtcaaaatctccaaagctacactccctttcctta 122  Q
    ||||||| |||||||||| |||| |||||||||||| ||||||| |||||  | ||||||||||  |||   || ||| | |  ||| ||||||| |||     
T  2467597 agtttcaagtctctctccgtcgtctcaaaacagtttttgtccattaccaacagtcttcgattctccgtctcgatttccgacggaacaatccctttacttc 2467498  T
Q  123 atcgtctctttgaaaggttccctaatattacatcacttaatatcactctctc 174  Q
    |||||||||||||||||||||| ||||| | |||| || | |||||||||||    
T  2467497 atcgtctctttgaaaggttccccaatatcagatcaattgacatcactctctc 2467446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 220 - 335
Target Start/End: Complemental strand, 2467413 - 2467298
Alignment:
Q  220 aaatctctacttcccctttagacctcaaatcactcactctctaccaccctgacagtgtgcctgaaaatgagttccgagctttgtccaagaagatgaaaaa 319  Q
    ||||||| |||| |||||| ||||||||||| |||||||||||||||||    |  || |||| | ||| ||| |||||||| |||||  ||||||||||    
T  2467413 aaatctccactttccctttggacctcaaatccctcactctctaccaccccataacggttcctgcagatgggttgcgagctttctccaaagagatgaaaaa 2467314  T
Q  320 tttgacatctctcact 335  Q
    ||||||||| ||||||    
T  2467313 tttgacatcactcact 2467298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 294 - 335
Target Start/End: Original strand, 2361217 - 2361258
Alignment:
Q  294 cgagctttgtccaagaagatgaaaaatttgacatctctcact 335  Q
    |||||||||||||| || ||||||||||||||||||||||||    
T  2361217 cgagctttgtccaaaaaaatgaaaaatttgacatctctcact 2361258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 290 - 331
Target Start/End: Original strand, 2381641 - 2381682
Alignment:
Q  290 gttccgagctttgtccaagaagatgaaaaatttgacatctct 331  Q
    |||||||||||||||||| ||||||||||||||||| |||||    
T  2381641 gttccgagctttgtccaaaaagatgaaaaatttgacctctct 2381682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 290 - 331
Target Start/End: Original strand, 2391269 - 2391310
Alignment:
Q  290 gttccgagctttgtccaagaagatgaaaaatttgacatctct 331  Q
    |||||||||||||||||| ||||||||||||||||| |||||    
T  2391269 gttccgagctttgtccaaaaagatgaaaaatttgacctctct 2391310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 97
Target Start/End: Original strand, 5106306 - 5106380
Alignment:
Q  23 agtttcaggtctctctccctcgtttcaaaacagtttctgtccatcaccaatcgccttcgattcttggtcaaaatc 97  Q
    ||||||| |||||||||   ||| |||||||||||| ||||||||||||| || | |||||||| ||||| ||||    
T  5106306 agtttcaagtctctctctgccgtctcaaaacagtttttgtccatcaccaaccgtcctcgattctcggtcacaatc 5106380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 335
Target Start/End: Original strand, 2621417 - 2621458
Alignment:
Q  294 cgagctttgtccaagaagatgaaaaatttgacatctctcact 335  Q
    |||||||| ||||| || ||||||||||||||||||||||||    
T  2621417 cgagctttctccaaaaatatgaaaaatttgacatctctcact 2621458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 334
Target Start/End: Original strand, 2393836 - 2393888
Alignment:
Q  283 aaaatgagttccgagctttgtccaagaagatg-aaaaatttgacatctctcac 334  Q
    |||||| ||| |||||||||||| | |||||| ||||||||||||||||||||    
T  2393836 aaaatgggttgcgagctttgtcccaaaagatgaaaaaatttgacatctctcac 2393888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 335
Target Start/End: Complemental strand, 12124634 - 12124598
Alignment:
Q  299 tttgtccaagaagatgaaaaatttgacatctctcact 335  Q
    ||||||||| ||||||||||||||||| |||||||||    
T  12124634 tttgtccaaaaagatgaaaaatttgacctctctcact 12124598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 44575183 - 44575227
Alignment:
Q  31 gtctctctccctcgtttcaaaacagtttctgtccatcaccaatcg 75  Q
    |||||||||| |||| |||||||||||||| || |||||||||||    
T  44575183 gtctctctccatcgtctcaaaacagtttctctcaatcaccaatcg 44575227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University