View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19582_high_17 (Length: 332)
Name: NF19582_high_17
Description: NF19582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19582_high_17 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 18 - 332
Target Start/End: Original strand, 35326287 - 35326610
Alignment:
| Q |
18 |
aatttcacaacataaaataatcttgtattgaaacattaaacatactttcctgtcaattaagtagattttgcttacagtgtgttgtcatagttttacttan |
117 |
Q |
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| T |
35326287 |
aatttcacaacataaaataatcttgtattgaaacattaaacatactttcctgtcaattaagtagattttgcttacagtgtgctgtcatagttttacttat |
35326386 |
T |
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| Q |
118 |
nnnnnngacaagtcatggcttcttttatgacacttgtaacttcgannnnnnnnnagtctgatatagatcattcataaaatnnnnnnntcgccaatatata |
217 |
Q |
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| T |
35326387 |
ttttttgacaagtcatggcttcttttatgacacttgtaacttcgaaaattttttagtctgatatagatcattcataaaataaaaaaatcgccaatatata |
35326486 |
T |
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| Q |
218 |
tctaaactttggatttga---------attcaatcttggtgggtgattaacaagnnnnnnnnngctagacatagatctgtaatattagatgtacnnnnnn |
308 |
Q |
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| T |
35326487 |
tctaaattttggatttgaaaaagtgttattctatcttggtgggtgattaacaagaaaaaaaaagctagacatagatctgtaatattagatgtacaaaaaa |
35326586 |
T |
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| Q |
309 |
ntgggatttgaatttatatccttt |
332 |
Q |
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| T |
35326587 |
atgggatttgaatttataaccttt |
35326610 |
T |
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