View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19582_high_25 (Length: 257)
Name: NF19582_high_25
Description: NF19582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19582_high_25 |
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Alignment Details
Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 17 - 168
Target Start/End: Original strand, 29845605 - 29845756
Alignment:
| Q |
17 |
aataatctgtatatccaaacagggcctaagaggaaacattgataacaaaatgaagaagcataccatcaagcctatcaacggcctttgaagcttcatcagc |
116 |
Q |
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| T |
29845605 |
aataatctgtatatccaaacagggcctaagaggaagcattgataacaaaatgaagaaacataccatcaagcctatcaacggcctttgaagcttcatcagc |
29845704 |
T |
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| Q |
117 |
atacttataacgaacaaaagcgaatcccctcgattcaccggtccttaaaaac |
168 |
Q |
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| T |
29845705 |
atacttataacgtacaaaagcgaatcccctcgattcaccggtccttaaaaac |
29845756 |
T |
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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 76 - 161
Target Start/End: Complemental strand, 37499987 - 37499902
Alignment:
| Q |
76 |
ataccatcaagcctatcaacggcctttgaagcttcatcagcatacttataacgaacaaaagcgaatcccctcgattcaccggtcct |
161 |
Q |
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| T |
37499987 |
ataccgtcgagcctatcaacagccttggaagcttcatcagcatatttgtaacgcacaaaagcgaaaccccttgattcaccggtcct |
37499902 |
T |
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