View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19582_high_28 (Length: 250)
Name: NF19582_high_28
Description: NF19582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19582_high_28 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 7683326 - 7683086
Alignment:
| Q |
1 |
caacttgcataaaa-gcaaatttcaaaatcagaaacatgacgagtacacatgtggcaagagccttggtttagggtgcactaataatggcacagctctctg |
99 |
Q |
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|||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
7683326 |
caacttgcataaaaagaaaatttcaaaatcaaaaacatgacgagtacacatgtggcaagagccttggtttagggtgcactaataatggcacagctctttg |
7683227 |
T |
|
| Q |
100 |
aatacctaagccaaaagattcatccatgtttatgtcttttgcatttagcccattttcaagctcccaatcaaacgaatgagccaaggtagcaatttgaagt |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
7683226 |
aatacctaagccaaaagattcatccatgtttatgtcttttgcatttatcccattttcaagctcccaattaaacgaatgagccaaggtagcaatttgaagt |
7683127 |
T |
|
| Q |
200 |
tggaccattcgaattcctagattcaatccagcacatattct |
240 |
Q |
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| T |
7683126 |
tggaccattcgaattcctagattcaatccagcacatattct |
7683086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 7683922 - 7683683
Alignment:
| Q |
1 |
caacttgcataaaagcaaatttcaaaatcagaaacatgacgagtacacatgtggcaagagccttggtttagggtgcactaataatggcacagctctctga |
100 |
Q |
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||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||| ||| |
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| T |
7683922 |
caacttgcataaaagcaaattccaaaatcaaaaacatgacgagtacacatgtggcaagagcctcggtttagggtgcactaa-aatggcacaactctttga |
7683824 |
T |
|
| Q |
101 |
atacctaagccaaaagattcatccatgtttatgtctttt-gcatttagcccattttcaagctcccaatcaaacgaatgagccaaggtagcaatttgaagt |
199 |
Q |
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| T |
7683823 |
atacctaggccaaaagcttcgtccatgtttatgtttttttgcatttagcccattttcaagctcccaattaaacgaatgagccaaagtggcaatttgaagt |
7683724 |
T |
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| Q |
200 |
tggaccattcgaattcctagattcaatccagcacatattct |
240 |
Q |
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| T |
7683723 |
tggaccattcgaattcatagattcaatcccgcgcatattct |
7683683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 240
Target Start/End: Complemental strand, 7664063 - 7663847
Alignment:
| Q |
24 |
aaaatcagaaacatgacgagtacacatgtggcaagagccttggtttagggtgcactaataatggcacagctctctgaatacctaagccaaaagattcatc |
123 |
Q |
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||||||||||||| ||||||||||| |||||| |||| || ||||||||||| || |||||||||||||||| || | || ||| || |||||| |
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| T |
7664063 |
aaaatcagaaacaagacgagtacacgtgtggcgagagtctaggtttagggtgtaccaataatggcacagctcgttgcagtgtcaacccataaccttcatc |
7663964 |
T |
|
| Q |
124 |
catgtttatgtcttttgcatttagcccattttcaagctcccaatcaaacgaatgagccaaggtagcaatttgaagttggaccattcgaattcctagattc |
223 |
Q |
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| T |
7663963 |
catgttcatttttccagcattgagtccattttcaagttcccaatcaaatgaatgggccagtgtagctgttagaagttggaccatacgaagccctagactc |
7663864 |
T |
|
| Q |
224 |
aatccagcacatattct |
240 |
Q |
| |
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| |||| ||||||||| |
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| T |
7663863 |
atcccaggacatattct |
7663847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 240
Target Start/End: Original strand, 7619831 - 7620045
Alignment:
| Q |
26 |
aatcagaaacatgacgagtacacatgtggcaagagccttggtttagggtgcactaataatggcacagctctctgaatacctaagccaaaagattcatcca |
125 |
Q |
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||||| ||||| ||||||||||| |||||| |||| || |||||||||||||| ||||||||||||||| |||| || ||| || |||||||| |
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| T |
7619831 |
aatcaaaaacaagacgagtacacgtgtggcgagagtctaggtttagggtgcaccgataatggcacagctcgttgaagtgtcaacccataaccttcatcca |
7619930 |
T |
|
| Q |
126 |
tgtttatgtcttttgcatttagcccattttcaagctcccaatcaaacgaatgagccaaggtagcaatttgaagttggaccattcgaattcctagattcaa |
225 |
Q |
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|||| || | | ||||| || ||||||||||| ||||||||||| ||||| || | ||||| || ||||||||||||| |||| |||||| ||| |
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| T |
7619931 |
tgttcatttttccagcattgagtccattttcaagttcccaatcaaatgaatgggctagtgtagctgttagaagttggaccatacgaagccctagactcat |
7620030 |
T |
|
| Q |
226 |
tccagcacatattct |
240 |
Q |
| |
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|||| ||||||||| |
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| T |
7620031 |
cccaggacatattct |
7620045 |
T |
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