View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19582_high_36 (Length: 220)
Name: NF19582_high_36
Description: NF19582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19582_high_36 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: scaffold0009 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 9883 - 9665
Alignment:
| Q |
1 |
tttcattactaaacgtttgcatcattggaaaacacatattcctctatatcaagaactgcatgagattgaaaataaaattaggaatagaaaatagataaag |
100 |
Q |
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| T |
9883 |
tttcattactaaacgtttgcatcattggaaaacacatattcctctatatcaagaactgcatgagattgaaaataaaattaggaatagaaaatagataaag |
9784 |
T |
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| Q |
101 |
cagatgnnnnnnnntatatatataatgaagagtata-ttcaacaaataagaataagaattgtatgattgaatctattgattttgagaggatacaaagtac |
199 |
Q |
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| T |
9783 |
cagatggaaaaaa--aaatatataatgaagagtatatttcaacaaataagaataagaattgtatgattgaatctattgattttgagaggatacaaagtac |
9686 |
T |
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| Q |
200 |
aattatatagtaccattgtgc |
220 |
Q |
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||||||||||||||||||||| |
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| T |
9685 |
aattatatagtaccattgtgc |
9665 |
T |
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Target: chr7 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 123 - 209
Target Start/End: Original strand, 36481218 - 36481300
Alignment:
| Q |
123 |
taatgaagagtatattc-aacaaataagaataagaattgtatgattgaatctattgattttgagaggatacaaagtacaattatatag |
209 |
Q |
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| T |
36481218 |
taatgaagagtatattccaacaaataag--taagaat---atgattgaatgtattgactttgagaggatacaaagtacaattatatag |
36481300 |
T |
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