View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19582_high_4 (Length: 552)
Name: NF19582_high_4
Description: NF19582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19582_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 463; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 49 - 536
Target Start/End: Original strand, 8937431 - 8937918
Alignment:
| Q |
49 |
taaggtgtagtcaagctcatcatattattctacaaaaacatgaagttgctctttcaaaaccttctttttcaatcacctcttgtcactcttttctctcttg |
148 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8937431 |
taaggtgtagtcaagctcatcatattattctacaaaaacatgaagttgctctttcaaaaccttctttttcaatcacctcttgtcactcttttctctcttg |
8937530 |
T |
|
| Q |
149 |
ctataatccttgtctctctacattatggtaatgctgtgaatctaccaaacaatgaaacagttccagcattcattgcctttggtgactcaatagttgactc |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
8937531 |
ctataatccttgtctctctacattatggtaatgctgtgaatctaccaaacaatgaaacagttccagcattcattgcctttggtgactctatagttgactc |
8937630 |
T |
|
| Q |
249 |
aggtaataacaactacatcatcaacactgtgttcaagtgcaactttccaccttatggtaaagactttggtggtggaaatcaaccaactggaagattcagc |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8937631 |
aggtaataacaactacatcatcaacactgtgttcaagtgcaactttccaccttatggtaaagactttggtggtggaaatcaaccaactggaagattcagc |
8937730 |
T |
|
| Q |
349 |
aatggtttagtcccttcagacatcattggtacaaaaataattcttgtcccgttacaatgcgaacctttatattgtggataatgcagccaatatagttatt |
448 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8937731 |
aatggtttagtcccttcagacatcattggtacaaaaataattcttgtcccgttacaatgcgaacctttatattgtggataatgcagccaatatagttatt |
8937830 |
T |
|
| Q |
449 |
tatattgcggtagcagaccgcaatttaaaaccatttatacataggagaaaaattagaatgaacaannnnnnncatgattcttaataac |
536 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
8937831 |
tatattgcggtagcagaccgcaatttaaaaccatttatacataggagaaaaattagaatgaacaatttttttcatgattcttaataac |
8937918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 3 - 387
Target Start/End: Original strand, 8945571 - 8945954
Alignment:
| Q |
3 |
aaggtttataaaaggtttatatcactaagctaaagtgaagttccaataaggtgtagtca--agctcatcatattattctacaaaaacatgaagttgctct |
100 |
Q |
| |
|
||||| ||||||||| ||| | |||||| ||||| | |||||||||| | ||||||||| ||| | ||||||||||||||||||||||||| || || | |
|
|
| T |
8945571 |
aaggtatataaaaggcttacaccactaaactaaaataaagttccaatcaagtgtagtcacaagcccttcatattattctacaaaaacatgaaatttctat |
8945670 |
T |
|
| Q |
101 |
ttcaaaaccttctttttcaatcacctcttgtcactcttttctctcttgctataatccttgtctctctacattatggtaatgctgtgaatctaccaaacaa |
200 |
Q |
| |
|
||||||| ||||||||||||||||||||||| | ||||||||||||| ||| |||| || |||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
8945671 |
ttcaaaatcttctttttcaatcacctcttgttaatcttttctctcttactacaatctttatctctctacattgtggtaatgctgtgaatctaccaaacaa |
8945770 |
T |
|
| Q |
201 |
tgaaacagttccagcattcattgcctttggtgactcaatagttgactcaggtaataacaactacatcatcaacactgtgttcaagtgcaactttccacct |
300 |
Q |
| |
|
||||||| |||||||| |||||| ||||| ||||| |||||||||||||||||||||||||| ||| |||| ||||||||||||||| |||| |
|
|
| T |
8945771 |
tgaaacaattccagcactcattgtgtttggagactctatagttgactcaggtaataacaacta---cattggcacttatgtcaagtgcaactttctacct |
8945867 |
T |
|
| Q |
301 |
tatggtaaagactttggtggtggaaatcaaccaactggaagattcagcaatggtttagtcccttcagacatcattggtacaaaaata |
387 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8945868 |
tatggtagagactttggtagtggaaatcaaccaacaggaaggtttagcaatggtttagtcccttcagacatcattggtacaaaaata |
8945954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 8937399 - 8937433
Alignment:
| Q |
1 |
ttaaggtttataaaaggtttatatcactaagctaa |
35 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
8937399 |
ttaaggtttataaaaggtttatatcactaagctaa |
8937433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 191 - 384
Target Start/End: Complemental strand, 31797675 - 31797488
Alignment:
| Q |
191 |
taccaaacaatgaaacagttccagcattcattgcctttggtgactcaatagttgactcaggtaataacaactacatcatcaacactgtgttcaagtgcaa |
290 |
Q |
| |
|
||||||||||||||||||| |||||| | ||| ||||||||||| |||||||| |||| ||||||||||| |||| |||| | |||| || | |
|
|
| T |
31797675 |
taccaaacaatgaaacagtgccagcagtttttgtatttggtgactctatagttgatccaggaaataacaacta---tatcagcactcttatcaaatgtga |
31797579 |
T |
|
| Q |
291 |
ctttccaccttatggtaaagactttggtggtggaaatcaaccaactggaagattcagcaatggtttagtcccttcagacatcattggtacaaaa |
384 |
Q |
| |
|
|||||||| ||||||| ||| |||| ||| ||| | |||||||| || |||||||||||||||||||| |||||| | ||||||||||| |
|
|
| T |
31797578 |
ttttccaccatatggtagagattttgatggaggagtt---ccaactggcaggttcagcaatggtttagtcccatcagaccttgttggtacaaaa |
31797488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University